C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003NT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100311-ENSG00000100316 CGP 9606 22:39223359-39320389
GeneTranscriptPositionBiotype
ENSG00000100311 (PDGFB)
platelet-derived growth factor beta polypeptide 		ENST00000331163 (PDGFB-001) 39223359-39244751 protein_coding
ENST00000381551 (PDGFB-002) 39224935-39240909 protein_coding
ENST00000440375 (PDGFB-004) 39230184-39241130 protein_coding
ENST00000455790 (PDGFB-003) 39230159-39243016 protein_coding
ENSG00000100316 (RPL3)
ribosomal protein L3 		ENST00000216146 (RPL3-001) 39312884-39319771 protein_coding
ENST00000401609 (RPL3-003) 39312882-39318614 protein_coding
ENST00000402527 (RPL3-009) 39313707-39319623 protein_coding
ENST00000420536 (RPL3-014) 39315552-39319623 nonsense_mediated_decay
ENST00000427905 (RPL3-011) 39315369-39319595 protein_coding
ENST00000453303 (RPL3-012) 39314700-39319111 protein_coding
ENST00000459859 (RPL3-008) 39318400-39319625 processed_transcript
ENST00000460589 (RPL3-010) 39317396-39319592 retained_intron
ENST00000461967 (RPL3-006) 39317855-39319623 retained_intron
ENST00000464182 (RPL3-019) 39312884-39313705 retained_intron
ENST00000465618 (RPL3-002) 39312884-39320389 processed_transcript
ENST00000467105 (RPL3-004) 39312887-39314965 retained_intron
ENST00000471290 (RPL3-016) 39314150-39315429 processed_transcript
ENST00000473638 (RPL3-018) 39312884-39313729 retained_intron
ENST00000481985 (RPL3-017) 39313931-39315486 retained_intron
ENST00000484358 (RPL3-015) 39315362-39317068 retained_intron
ENST00000484615 (RPL3-013) 39317051-39319649 retained_intron
ENST00000498462 (RPL3-007) 39318112-39319577 retained_intron
ENSG00000209482 (SNORD83A)
small nucleolar RNA, C/D box 83A 		ENST00000386747 (SNORD83A-201) 39315213-39315307 snoRNA
ENSG00000224794 (RP3-333H23.8)
 ENST00000434516 (RP3-333H23.8-001) 39292988-39295563 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0003NT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000489-ENSMUSG00000060036 CGP 10090 15:79995900-80091868
GeneTranscriptPositionBiotype
ENSMUSG00000000489 (Pdgfb)
platelet derived growth factor, B polypeptide 		ENSMUST00000000500 (Pdgfb-201) 79995900-80014808 protein_coding
ENSMUSG00000022415 (Syngr1)
synaptogyrin 1 		ENSMUST00000009727 (Syngr1-001) 80091344-80119501 protein_coding
ENSMUST00000009728 (Syngr1-002) 80091334-80113441 protein_coding
ENSMUST00000135727 (Syngr1-004) 80115473-80116265 protein_coding
ENSMUST00000143928 (Syngr1-003) 80097870-80111662 protein_coding
ENSMUSG00000060036 (Rpl3)
ribosomal protein L3 		ENSMUST00000081650 (Rpl3-001) 80077796-80083353 protein_coding
ENSMUST00000185306 (Rpl3-003) 80080896-80091868 protein_coding
ENSMUST00000185928 (Rpl3-005) 80081983-80083337 retained_intron
ENSMUST00000187578 (Rpl3-002) 80077795-80083353 retained_intron
ENSMUST00000187832 (Rpl3-006) 80080417-80083333 nonsense_mediated_decay
ENSMUST00000188025 (Rpl3-007) 80077794-80082583 retained_intron
ENSMUSG00000077734 (Snord83b)
small nucleolar RNA, C/D box 83B 		ENSMUST00000104546 (Snord83b-201) 80078498-80078591 snoRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NT_0001ENSG00000100311ENST00000331163ENST00000381551ENST00000440375ENST00000455790ENSG00000100316ENST00000216146ENST00000401609ENST00000402527ENST00000420536ENST00000427905ENST00000453303ENST00000459859ENST00000460589ENST00000461967ENST00000464182ENST00000465618ENST00000467105ENST00000471290ENST00000473638ENST00000481985ENST00000484358ENST00000484615ENST00000498462ENSG00000209482ENST00000386747ENSG00000224794ENST00000434516CIL_0003NT_0002ENSMUSG00000000489ENSMUST00000000500ENSMUSG00000022415ENSMUST00000009727ENSMUST00000009728ENSMUST00000135727ENSMUST00000143928ENSMUSG00000060036ENSMUST00000081650ENSMUST00000185306ENSMUST00000185928ENSMUST00000187578ENSMUST00000187832ENSMUST00000188025ENSMUSG00000077734ENSMUST00000104546
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NT_0001ENSG00000100311ENST00000331163ENST00000381551ENST00000440375ENST00000455790ENSG00000100316ENST00000216146ENST00000401609ENST00000402527ENSG00000209482ENST00000386747ENSG00000224794ENST00000434516CIL_0003NT_0002ENSMUSG00000000489ENSMUST00000000500ENSMUSG00000022415ENSMUST00000009727ENSMUST00000009728ENSMUST00000135727ENSMUST00000143928ENSMUSG00000060036ENSMUST00000081650ENSMUST00000185306ENSMUST00000185928ENSMUST00000187578ENSMUSG00000077734ENSMUST00000104546
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100311 ENST00000331163 2.976±0.00 4.214±0.00 0.156±0.00 2.583±0.00 1.258±0.73 2.497±2.36 2.256±1.15 1.790±1.66 0.514±0.26 8.946±8.00 1.065±0.36 1.914±0.61 16.918±3.52 0.835±0.59
ENST00000381551 N/A 4.181±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.683±0.00 N/A N/A N/A
ENST00000440375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.951±0.00
ENST00000455790 N/A N/A N/A N/A N/A 0.629±0.00 2.169±0.00 1.124±0.00 N/A N/A N/A 3.242±0.00 23.144±0.00 N/A
ENSG00000100316 ENST00000216146 484.396±0.00 354.677±0.00 48.616±0.00 158.802±142.73 214.257±172.20 385.275±320.41 8.084±0.00 205.136±127.99 78.900±0.00 105.404±78.14 30.038±19.70 790.227±710.25 N/A 617.393±0.00
ENST00000401609 305.567±0.00 857.687±0.00 N/A 40.475±0.00 244.450±166.83 391.704±337.85 59.485±52.98 199.690±135.36 211.429±194.75 565.502±503.63 185.012±0.00 1469.379±1290.37 1357.637±297.44 475.124±71.82
ENST00000402527 367.784±0.00 N/A N/A 70.140±0.00 171.396±0.00 N/A N/A N/A N/A N/A N/A 322.335±0.00 N/A 158.072±0.00
ENST00000420536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000209482 ENST00000386747 N/A N/A N/A N/A 0.910±0.00 N/A N/A N/A N/A 0.926±0.00 N/A 36.305±31.80 N/A 1.045±0.00
ENSG00000224794 ENST00000434516 0.044±0.00 0.035±0.00 N/A 0.107±0.00 0.074±0.00 0.044±0.00 N/A 0.190±0.00 N/A N/A N/A 0.049±0.03 0.038±0.00 0.278±0.17
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000489 ENSMUST00000000500 21.170±7.59 25.894±2.50 3.615±0.31 4.622±0.65 10.318±5.59 5.778±1.01 10.223±5.54 8.150±3.00 0.691±0.33 36.994±11.30 6.411±1.90 10.631±4.58 13.533±13.98 0.577±0.32
ENSMUSG00000022415 ENSMUST00000009727 0.596±0.10 6.537±0.84 4.889±0.21 27.567±21.80 1.434±0.22 2.360±0.22 2.434±0.20 6.181±0.52 0.271±0.20 2.115±0.12 1.490±0.10 1.980±0.65 1.812±0.84 0.368±0.09
ENSMUST00000009728 12.691±0.75 16.003±6.31 26.184±3.13 N/A 15.694±6.86 2.269±0.40 79.434±9.50 23.117±1.88 4.684±4.93 10.343±3.06 31.300±2.71 10.558±3.75 41.327±14.59 1.983±0.84
ENSMUST00000135727 N/A N/A N/A N/A N/A 5.743±2.43 N/A N/A 0.249±0.00 N/A N/A 8.034±0.81 N/A 0.799±0.07
ENSMUST00000143928 N/A N/A N/A N/A N/A N/A N/A N/A 0.536±0.06 N/A N/A N/A N/A N/A
ENSMUSG00000060036 ENSMUST00000081650 253.682±112.93 99.735±13.57 532.379±33.72 280.723±24.20 241.286±21.82 266.586±16.79 71.879±5.35 218.130±21.60 319.458±243.07 203.548±10.97 26.381±6.97 451.027±145.18 371.085±194.89 43.744±6.42
ENSMUST00000185306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.349±0.00
ENSMUST00000185928 N/A 571.789±93.83 N/A N/A 142.993±0.00 282.752±55.43 N/A N/A 139.154±16.91 132.439±15.88 N/A 523.444±116.39 N/A N/A
ENSMUST00000187578 N/A N/A N/A N/A N/A N/A N/A N/A 58.052±5.09 N/A N/A N/A N/A N/A
ENSMUST00000187832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000077734 ENSMUST00000104546 5360.810±0.00 N/A N/A 100.380±0.00 3998.095±519.86 N/A 3181.250±0.00 N/A 21191.500±2031.30 N/A N/A 3670.828±3500.10 695.095±0.00 1793.855±1722.10

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