C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100316 RPL3 9606 - 22:39312882-39320389 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216146 RPL3-001 39312884-39319771 protein_coding
  ENST00000401609 RPL3-003 39312882-39318614 protein_coding
  ENST00000402527 RPL3-009 39313707-39319623 protein_coding
  ENST00000420536 RPL3-014 39315552-39319623 nonsense_mediated_decay
  ENST00000427905 RPL3-011 39315369-39319595 protein_coding
  ENST00000453303 RPL3-012 39314700-39319111 protein_coding
  ENST00000459859 RPL3-008 39318400-39319625 processed_transcript
  ENST00000460589 RPL3-010 39317396-39319592 retained_intron
  ENST00000461967 RPL3-006 39317855-39319623 retained_intron
  ENST00000464182 RPL3-019 39312884-39313705 retained_intron
  ENST00000465618 RPL3-002 39312884-39320389 processed_transcript
  ENST00000467105 RPL3-004 39312887-39314965 retained_intron
  ENST00000471290 RPL3-016 39314150-39315429 processed_transcript
  ENST00000473638 RPL3-018 39312884-39313729 retained_intron
  ENST00000481985 RPL3-017 39313931-39315486 retained_intron
  ENST00000484358 RPL3-015 39315362-39317068 retained_intron
  ENST00000484615 RPL3-013 39317051-39319649 retained_intron
  ENST00000498462 RPL3-007 39318112-39319577 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216146ENST00000401609ENST00000402527
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216146 484.396±0.00 354.677±0.00 48.616±0.00 158.802±142.73 214.257±172.20 385.275±320.41 8.084±0.00 205.136±127.99 78.900±0.00 105.404±78.14 30.038±19.70 790.227±710.25 N/A 617.393±0.00
ENST00000401609 305.567±0.00 857.687±0.00 N/A 40.475±0.00 244.450±166.83 391.704±337.85 59.485±52.98 199.690±135.36 211.429±194.75 565.502±503.63 185.012±0.00 1469.379±1290.37 1357.637±297.44 475.124±71.82
ENST00000402527 367.784±0.00 N/A N/A 70.140±0.00 171.396±0.00 N/A N/A N/A N/A N/A N/A 322.335±0.00 N/A 158.072±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NT CIL_0003NT_0001 CGP 22:39223359-39320389
CIL_0000CB CIL_0000CB_0001 CGP 22:39312882-39385588

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071353 IEA cellular response to interleukin-4

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003599 rpl3 ribosomal protein L3 protein_coding Danio_rerio
ENSMUSG00000060036 Rpl3 ribosomal protein L3 protein_coding Mus_musculus

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