C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081650 Rpl3-001 ENSMUSG00000060036 10090 - 15:80077796-80083353 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081650
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081650 253.682±112.93 99.735±13.57 532.379±33.72 280.723±24.20 241.286±21.82 266.586±16.79 71.879±5.35 218.130±21.60 319.458±243.07 203.548±10.97 26.381±6.97 451.027±145.18 371.085±194.89 43.744±6.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NT CIL_0003NT_0002 CGP 15:79995900-80091868
CIL_0000CB CIL_0000CB_0002 CGP 15:80077794-80119501

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005634 IEA nucleus
GO:0005730 ISS nucleolus
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0006412 IEA translation
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071353 IDA cellular response to interleukin-4

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000011251 rpl3-001 protein_coding Danio_rerio 0 926
ENSDART00000138327 rpl3-003 protein_coding Danio_rerio 3e-34 150
ENST00000216146 RPL3-001 protein_coding Homo_sapiens 0 1544
ENST00000401609 RPL3-003 protein_coding Homo_sapiens 0 1535
ENST00000402527 RPL3-009 protein_coding Homo_sapiens 0 1208
ENST00000413027 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1317
ENST00000414649 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1317
ENST00000417615 RPL3P4-001 processed_pseudogene Homo_sapiens 0 540
ENST00000420536 RPL3-014 nonsense_mediated_decay Homo_sapiens 1.96182e-44 183
ENST00000427905 RPL3-011 protein_coding Homo_sapiens 0 863
ENST00000428665 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1323
ENST00000434677 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1304
ENST00000436852 RPL3P12-001 processed_pseudogene Homo_sapiens 0 1123
ENST00000437106 RPL3P1-001 processed_pseudogene Homo_sapiens 0 1103
ENST00000445022 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1293
ENST00000449035 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1328
ENST00000453303 RPL3-012 protein_coding Homo_sapiens 0 1029
ENST00000454216 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1293
ENST00000463217 RPL3P9-001 processed_pseudogene Homo_sapiens 0 1236
ENST00000464182 RPL3-019 retained_intron Homo_sapiens 0 257
ENST00000465618 RPL3-002 processed_transcript Homo_sapiens 0 1088
ENST00000467105 RPL3-004 retained_intron Homo_sapiens 0 257
ENST00000467870 RPL3P3-001 processed_pseudogene Homo_sapiens 0 1254
ENST00000473638 RPL3-018 retained_intron Homo_sapiens 0 279
ENST00000474162 RPL3P6-001 processed_pseudogene Homo_sapiens 0 1120
ENST00000484358 RPL3-015 retained_intron Homo_sapiens 0 418

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