C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial ribosomal protein S9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000060679 Mrps9 10090 + 1:42851233-42905682 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057208 Mrps9-002 42851233-42905682 protein_coding
  ENSMUST00000185376 Mrps9-003 42851276-42899679 processed_transcript
  ENSMUST00000185523 Mrps9-001 42851276-42902013 processed_transcript
  ENSMUST00000187414 Mrps9-008 42862514-42899128 retained_intron
  ENSMUST00000188174 Mrps9-005 42851285-42881931 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057208ENSMUST00000185523ENSMUST00000188174
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057208 11.727±1.73 18.154±0.76 15.200±0.82 17.132±5.54 9.751±2.67 13.613±1.43 25.933±4.46 19.492±2.06 14.709±6.12 11.075±1.93 14.818±1.12 14.620±5.78 21.705±6.49 13.714±1.13
ENSMUST00000185523 N/A N/A N/A 2.348±0.00 N/A N/A N/A N/A N/A 1.467±0.00 N/A 3.593±0.54 1.491±0.00 N/A
ENSMUST00000188174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.944±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JQ CIL_0007JQ_0002 UCNEbase 1:40943211-42889148
CIL_0008O2 CIL_0008O2_0002 VISTA 1:42378245-42979419
CIL_0008KZ CIL_0008KZ_0002 VISTA 1:42390175-42992711
CIL_000902 CIL_000902_0002 VISTA 1:42440655-43042396
CIL_00096O CIL_00096O_0002 VISTA 1:42588323-43189246
CIL_0004II CIL_0004II_0003 CGP 1:42695768-42905682
CIL_0003Y2 CIL_0003Y2_0002 CGP 1:42851233-43035456

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005730 IEA nucleolus
GO:0005739 IDA mitochondrion
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061505 mrps9 mitochondrial ribosomal protein S9 protein_coding Danio_rerio
ENSG00000135972 MRPS9 mitochondrial ribosomal protein S9 protein_coding Homo_sapiens

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