C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004II_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000095896-ENSDARG00000061505 CGP 7955 6:14850010-14927548
GeneTranscriptPositionBiotype
ENSDARG00000061505 (mrps9)
mitochondrial ribosomal protein S9 		ENSDART00000087782 (mrps9-001) 14880881-14927548 protein_coding
ENSDARG00000095896 (pou3f3b)
POU class 3 homeobox 3b 		ENSDART00000149202 (pou3f3b-001) 14850018-14853183 protein_coding
ENSDART00000149949 (pou3f3b-002) 14850010-14853188 protein_coding
ENSDARG00000097482 (si:ch73-30b17.2)
si:ch73-30b17.2 		ENSDART00000157118 (si:ch73-30b17.2-001) 14856589-14868157 lincRNA
ENSDARG00000097534 (si:ch73-30b17.3)
si:ch73-30b17.3 		ENSDART00000155938 (si:ch73-30b17.3-001) 14857668-14860378 lincRNA
CIL_0004II_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198914-ENSG00000135972 CGP 9606 2:104855511-105099960
GeneTranscriptPositionBiotype
ENSG00000135972 (MRPS9)
mitochondrial ribosomal protein S9 		ENST00000258455 (MRPS9-001) 105037983-105099960 protein_coding
ENST00000413583 (MRPS9-002) 105089018-105097288 nonsense_mediated_decay
ENST00000472220 (MRPS9-003) 105092098-105099900 retained_intron
ENSG00000198914 (POU3F3)
POU class 3 homeobox 3 		ENST00000361360 (POU3F3-001) 104855511-104860471 protein_coding
ENSG00000224509 (AC010884.1)
 ENST00000456519 (AC010884.1-001) 104936411-105038496 antisense
ENSG00000229743 (LINC01159)
long intergenic non-protein coding RNA 1159 		ENST00000433433 (LINC01159-001) 104865497-104872452 lincRNA
ENST00000434764 (LINC01159-002) 104869846-104872595 antisense
ENSG00000231851 (AC104655.2)
 ENST00000432211 (AC104655.2-001) 105097052-105098637 antisense
ENST00000449177 (AC104655.2-002) 105097060-105102944 antisense
ENSG00000239587 (AC018730.4)
 ENST00000454183 (AC018730.4-001) 104865407-104867496 antisense
ENSG00000263685 (AC010884.2)
 ENST00000579548 (AC010884.2-201) 104992902-104992980 miRNA
ENSG00000269707 (RP11-13J10.1)
 ENST00000598623 (RP11-13J10.1-001) 104853285-104926052 sense_overlapping
CIL_0004II_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045515-ENSMUSG00000060679 CGP 10090 1:42695768-42905682
GeneTranscriptPositionBiotype
ENSMUSG00000045515 (Pou3f3)
POU domain, class 3, transcription factor 3 		ENSMUST00000054883 (Pou3f3-001) 42695768-42703176 protein_coding
ENSMUSG00000060679 (Mrps9)
mitochondrial ribosomal protein S9 		ENSMUST00000057208 (Mrps9-002) 42851233-42905682 protein_coding
ENSMUST00000185376 (Mrps9-003) 42851276-42899679 processed_transcript
ENSMUST00000185523 (Mrps9-001) 42851276-42902013 processed_transcript
ENSMUST00000187414 (Mrps9-008) 42862514-42899128 retained_intron
ENSMUST00000188174 (Mrps9-005) 42851285-42881931 retained_intron
ENSMUSG00000093436 (Gm20646)
predicted gene 20646 		ENSMUST00000176807 (Gm20646-001) 42694925-42744791 sense_overlapping
ENSMUSG00000097063 (Pou3f3os2)
POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2 		ENSMUST00000180589 (Pou3f3os2-001) 42707061-42713454 lincRNA
ENSMUSG00000099784 (RP23-114H2.2)
predicted gene 28525 		ENSMUST00000188773 (RP23-114H2.2-001) 42750712-42752881 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004II_0001ENSDARG00000061505ENSDART00000087782ENSDARG00000095896ENSDART00000149202ENSDART00000149949ENSDARG00000097482ENSDART00000157118ENSDARG00000097534ENSDART00000155938CIL_0004II_0002ENSG00000135972ENST00000258455ENST00000413583ENST00000472220ENSG00000198914ENST00000361360ENSG00000224509ENST00000456519ENSG00000229743ENST00000433433ENST00000434764ENSG00000231851ENST00000432211ENST00000449177ENSG00000239587ENST00000454183ENSG00000263685ENST00000579548ENSG00000269707ENST00000598623CIL_0004II_0003ENSMUSG00000045515ENSMUST00000054883ENSMUSG00000060679ENSMUST00000057208ENSMUST00000185376ENSMUST00000185523ENSMUST00000187414ENSMUST00000188174ENSMUSG00000093436ENSMUST00000176807ENSMUSG00000097063ENSMUST00000180589ENSMUSG00000099784ENSMUST00000188773
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004II_0001ENSDARG00000061505ENSDART00000087782ENSDARG00000095896ENSDART00000149202ENSDART00000149949ENSDARG00000097482ENSDART00000157118ENSDARG00000097534ENSDART00000155938CIL_0004II_0002ENSG00000135972ENST00000258455ENST00000472220ENSG00000198914ENST00000361360ENSG00000224509ENST00000456519ENSG00000229743ENST00000433433ENST00000434764ENSG00000231851ENST00000432211ENSG00000239587ENST00000454183ENSG00000263685ENST00000579548ENSG00000269707ENST00000598623CIL_0004II_0003ENSMUSG00000045515ENSMUST00000054883ENSMUSG00000060679ENSMUST00000057208ENSMUST00000185523ENSMUST00000188174ENSMUSG00000093436ENSMUST00000176807ENSMUSG00000097063ENSMUST00000180589ENSMUSG00000099784ENSMUST00000188773
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000061505 ENSDART00000087782 N/A N/A N/A 7.363±1.99 N/A N/A 15.911±1.05 8.567±0.00 1.520±0.00 N/A 5.612±0.00 N/A N/A N/A
ENSDARG00000095896 ENSDART00000149202 N/A N/A N/A 6.431±1.93 N/A N/A N/A 0.713±0.00 N/A N/A 0.623±0.00 N/A N/A N/A
ENSDART00000149949 N/A N/A N/A 8.342±2.83 N/A N/A 0.019±0.00 2.376±1.17 N/A N/A 0.416±0.00 N/A N/A N/A
ENSDARG00000097482 ENSDART00000157118 N/A N/A N/A 0.180±0.00 N/A N/A N/A 1.531±0.00 0.116±0.00 N/A N/A N/A N/A N/A
ENSDARG00000097534 ENSDART00000155938 N/A N/A N/A 0.145±0.07 N/A N/A 0.120±0.04 0.074±0.00 N/A N/A 0.189±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135972 ENST00000258455 5.568±0.00 10.005±0.00 3.384±0.00 7.539±1.12 4.819±3.19 6.377±4.23 13.592±6.87 9.394±4.86 5.608±1.52 3.658±0.72 13.215±8.60 16.973±11.53 8.492±3.27 21.515±5.97
ENST00000413583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472220 N/A N/A N/A N/A N/A 2.039±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198914 ENST00000361360 0.539±0.00 0.020±0.00 6.904±0.00 7.197±2.17 0.027±0.00 0.267±0.16 0.045±0.00 18.250±0.00 0.149±0.00 0.004±0.00 N/A 0.020±0.01 0.020±0.01 0.987±0.91
ENSG00000224509 ENST00000456519 N/A 0.060±0.00 0.468±0.00 0.544±0.12 0.138±0.04 0.168±0.00 N/A 0.180±0.00 N/A N/A N/A 0.126±0.05 0.100±0.00 0.265±0.11
ENSG00000229743 ENST00000433433 0.006±0.00 N/A 0.102±0.00 0.155±0.00 N/A N/A N/A 0.326±0.07 N/A N/A N/A N/A N/A 0.149±0.00
ENST00000434764 0.054±0.00 N/A 0.150±0.00 0.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.249±0.00
ENSG00000231851 ENST00000432211 3.676±0.00 7.003±0.00 N/A 8.029±0.00 5.724±0.00 5.598±0.00 N/A 9.516±0.00 5.235±0.87 2.169±0.00 10.905±0.00 N/A 4.282±0.00 11.855±0.00
ENST00000449177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000239587 ENST00000454183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.293±0.00
ENSG00000263685 ENST00000579548 1.066±0.00 5.043±0.00 N/A 0.733±0.00 4.273±0.00 N/A 0.321±0.00 0.691±0.00 N/A N/A N/A 237.535±0.00 N/A 1.934±0.00
ENSG00000269707 ENST00000598623 0.069±0.00 N/A 1.376±0.00 5.869±0.00 N/A 0.148±0.00 N/A N/A N/A N/A N/A N/A N/A 0.142±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000045515 ENSMUST00000054883 0.017±0.01 0.012±0.00 0.104±0.00 24.597±16.91 0.011±0.00 0.368±0.05 0.004±0.00 6.809±0.79 0.024±0.04 0.056±0.01 0.006±0.00 0.216±0.10 0.031±0.02 0.111±0.15
ENSMUSG00000060679 ENSMUST00000057208 11.727±1.73 18.154±0.76 15.200±0.82 17.132±5.54 9.751±2.67 13.613±1.43 25.933±4.46 19.492±2.06 14.709±6.12 11.075±1.93 14.818±1.12 14.620±5.78 21.705±6.49 13.714±1.13
ENSMUST00000185376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185523 N/A N/A N/A 2.348±0.00 N/A N/A N/A N/A N/A 1.467±0.00 N/A 3.593±0.54 1.491±0.00 N/A
ENSMUST00000187414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.944±0.00 N/A N/A
ENSMUSG00000093436 ENSMUST00000176807 N/A N/A 0.013±0.01 0.767±0.13 N/A N/A N/A 0.359±0.06 0.007±0.00 N/A N/A 0.029±0.00 0.060±0.00 0.046±0.02
ENSMUSG00000097063 ENSMUST00000180589 N/A N/A 0.535±0.00 1.307±0.74 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.092±0.02
ENSMUSG00000099784 ENSMUST00000188773 N/A N/A N/A 0.312±0.09 N/A N/A N/A 0.036±0.02 N/A 0.035±0.00 N/A N/A N/A N/A

Loading