C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004II_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000095896-ENSDARG00000061505 CGP 7955 6:14850010-14927548
GeneTranscriptPositionBiotype
ENSDARG00000061505 (mrps9)
mitochondrial ribosomal protein S9 		ENSDART00000087782 (mrps9-001) 14880881-14927548 protein_coding
ENSDARG00000095896 (pou3f3b)
POU class 3 homeobox 3b 		ENSDART00000149202 (pou3f3b-001) 14850018-14853183 protein_coding
ENSDART00000149949 (pou3f3b-002) 14850010-14853188 protein_coding
ENSDARG00000097482 (si:ch73-30b17.2)
si:ch73-30b17.2 		ENSDART00000157118 (si:ch73-30b17.2-001) 14856589-14868157 lincRNA
ENSDARG00000097534 (si:ch73-30b17.3)
si:ch73-30b17.3 		ENSDART00000155938 (si:ch73-30b17.3-001) 14857668-14860378 lincRNA

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0004II_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198914-ENSG00000135972 CGP 9606 2:104855511-105099960
GeneTranscriptPositionBiotype
ENSG00000135972 (MRPS9)
mitochondrial ribosomal protein S9 		ENST00000258455 (MRPS9-001) 105037983-105099960 protein_coding
ENST00000413583 (MRPS9-002) 105089018-105097288 nonsense_mediated_decay
ENST00000472220 (MRPS9-003) 105092098-105099900 retained_intron
ENSG00000198914 (POU3F3)
POU class 3 homeobox 3 		ENST00000361360 (POU3F3-001) 104855511-104860471 protein_coding
ENSG00000224509 (AC010884.1)
 ENST00000456519 (AC010884.1-001) 104936411-105038496 antisense
ENSG00000229743 (LINC01159)
long intergenic non-protein coding RNA 1159 		ENST00000433433 (LINC01159-001) 104865497-104872452 lincRNA
ENST00000434764 (LINC01159-002) 104869846-104872595 antisense
ENSG00000231851 (AC104655.2)
 ENST00000432211 (AC104655.2-001) 105097052-105098637 antisense
ENST00000449177 (AC104655.2-002) 105097060-105102944 antisense
ENSG00000239587 (AC018730.4)
 ENST00000454183 (AC018730.4-001) 104865407-104867496 antisense
ENSG00000263685 (AC010884.2)
 ENST00000579548 (AC010884.2-201) 104992902-104992980 miRNA
ENSG00000269707 (RP11-13J10.1)
 ENST00000598623 (RP11-13J10.1-001) 104853285-104926052 sense_overlapping

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0004II_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045515-ENSMUSG00000060679 CGP 10090 1:42695768-42905682
GeneTranscriptPositionBiotype
ENSMUSG00000045515 (Pou3f3)
POU domain, class 3, transcription factor 3 		ENSMUST00000054883 (Pou3f3-001) 42695768-42703176 protein_coding
ENSMUSG00000060679 (Mrps9)
mitochondrial ribosomal protein S9 		ENSMUST00000057208 (Mrps9-002) 42851233-42905682 protein_coding
ENSMUST00000185376 (Mrps9-003) 42851276-42899679 processed_transcript
ENSMUST00000185523 (Mrps9-001) 42851276-42902013 processed_transcript
ENSMUST00000187414 (Mrps9-008) 42862514-42899128 retained_intron
ENSMUST00000188174 (Mrps9-005) 42851285-42881931 retained_intron
ENSMUSG00000093436 (Gm20646)
predicted gene 20646 		ENSMUST00000176807 (Gm20646-001) 42694925-42744791 sense_overlapping
ENSMUSG00000097063 (Pou3f3os2)
POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2 		ENSMUST00000180589 (Pou3f3os2-001) 42707061-42713454 lincRNA
ENSMUSG00000099784 (RP23-114H2.2)
predicted gene 28525 		ENSMUST00000188773 (RP23-114H2.2-001) 42750712-42752881 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004II_0001ENSDARG00000061505ENSDART00000087782ENSDARG00000095896ENSDART00000149202ENSDART00000149949ENSDARG00000097482ENSDART00000157118ENSDARG00000097534ENSDART00000155938CIL_0004II_0002ENSG00000135972ENST00000258455ENST00000413583ENST00000472220ENSG00000198914ENST00000361360ENSG00000224509ENST00000456519ENSG00000229743ENST00000433433ENST00000434764ENSG00000231851ENST00000432211ENST00000449177ENSG00000239587ENST00000454183ENSG00000263685ENST00000579548ENSG00000269707ENST00000598623CIL_0004II_0003ENSMUSG00000045515ENSMUST00000054883ENSMUSG00000060679ENSMUST00000057208ENSMUST00000185376ENSMUST00000185523ENSMUST00000187414ENSMUST00000188174ENSMUSG00000093436ENSMUST00000176807ENSMUSG00000097063ENSMUST00000180589ENSMUSG00000099784ENSMUST00000188773
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004II_0001ENSDARG00000061505ENSDART00000087782ENSDARG00000095896ENSDART00000149202ENSDART00000149949ENSDARG00000097482ENSDART00000157118ENSDARG00000097534ENSDART00000155938CIL_0004II_0002ENSG00000135972ENST00000258455ENST00000472220ENSG00000198914ENST00000361360ENSG00000224509ENST00000456519ENSG00000229743ENST00000433433ENST00000434764ENSG00000231851ENST00000432211ENSG00000239587ENST00000454183ENSG00000263685ENST00000579548ENSG00000269707ENST00000598623CIL_0004II_0003ENSMUSG00000045515ENSMUST00000054883ENSMUSG00000060679ENSMUST00000057208ENSMUST00000185523ENSMUST00000188174ENSMUSG00000093436ENSMUST00000176807ENSMUSG00000097063ENSMUST00000180589ENSMUSG00000099784ENSMUST00000188773
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000061505 ENSDART00000087782 N/A N/A N/A 7.363±1.99 N/A N/A 15.911±1.05 8.567±0.00 1.520±0.00 N/A 5.612±0.00 N/A N/A N/A
ENSDARG00000095896 ENSDART00000149202 N/A N/A N/A 6.431±1.93 N/A N/A N/A 0.713±0.00 N/A N/A 0.623±0.00 N/A N/A N/A
ENSDART00000149949 N/A N/A N/A 8.342±2.83 N/A N/A 0.019±0.00 2.376±1.17 N/A N/A 0.416±0.00 N/A N/A N/A
ENSDARG00000097482 ENSDART00000157118 N/A N/A N/A 0.180±0.00 N/A N/A N/A 1.531±0.00 0.116±0.00 N/A N/A N/A N/A N/A
ENSDARG00000097534 ENSDART00000155938 N/A N/A N/A 0.145±0.07 N/A N/A 0.120±0.04 0.074±0.00 N/A N/A 0.189±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135972 ENST00000258455 5.568±0.00 10.005±0.00 3.384±0.00 7.539±1.12 4.819±3.19 6.377±4.23 13.592±6.87 9.394±4.86 5.608±1.52 3.658±0.72 13.215±8.60 16.973±11.53 8.492±3.27 21.515±5.97
ENST00000413583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472220 N/A N/A N/A N/A N/A 2.039±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198914 ENST00000361360 0.539±0.00 0.020±0.00 6.904±0.00 7.197±2.17 0.027±0.00 0.267±0.16 0.045±0.00 18.250±0.00 0.149±0.00 0.004±0.00 N/A 0.020±0.01 0.020±0.01 0.987±0.91
ENSG00000224509 ENST00000456519 N/A 0.060±0.00 0.468±0.00 0.544±0.12 0.138±0.04 0.168±0.00 N/A 0.180±0.00 N/A N/A N/A 0.126±0.05 0.100±0.00 0.265±0.11
ENSG00000229743 ENST00000433433 0.006±0.00 N/A 0.102±0.00 0.155±0.00 N/A N/A N/A 0.326±0.07 N/A N/A N/A N/A N/A 0.149±0.00
ENST00000434764 0.054±0.00 N/A 0.150±0.00 0.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.249±0.00
ENSG00000231851 ENST00000432211 3.676±0.00 7.003±0.00 N/A 8.029±0.00 5.724±0.00 5.598±0.00 N/A 9.516±0.00 5.235±0.87 2.169±0.00 10.905±0.00 N/A 4.282±0.00 11.855±0.00
ENST00000449177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000239587 ENST00000454183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.293±0.00
ENSG00000263685 ENST00000579548 1.066±0.00 5.043±0.00 N/A 0.733±0.00 4.273±0.00 N/A 0.321±0.00 0.691±0.00 N/A N/A N/A 237.535±0.00 N/A 1.934±0.00
ENSG00000269707 ENST00000598623 0.069±0.00 N/A 1.376±0.00 5.869±0.00 N/A 0.148±0.00 N/A N/A N/A N/A N/A N/A N/A 0.142±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000045515 ENSMUST00000054883 0.017±0.01 0.012±0.00 0.104±0.00 24.597±16.91 0.011±0.00 0.368±0.05 0.004±0.00 6.809±0.79 0.024±0.04 0.056±0.01 0.006±0.00 0.216±0.10 0.031±0.02 0.111±0.15
ENSMUSG00000060679 ENSMUST00000057208 11.727±1.73 18.154±0.76 15.200±0.82 17.132±5.54 9.751±2.67 13.613±1.43 25.933±4.46 19.492±2.06 14.709±6.12 11.075±1.93 14.818±1.12 14.620±5.78 21.705±6.49 13.714±1.13
ENSMUST00000185376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185523 N/A N/A N/A 2.348±0.00 N/A N/A N/A N/A N/A 1.467±0.00 N/A 3.593±0.54 1.491±0.00 N/A
ENSMUST00000187414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.944±0.00 N/A N/A
ENSMUSG00000093436 ENSMUST00000176807 N/A N/A 0.013±0.01 0.767±0.13 N/A N/A N/A 0.359±0.06 0.007±0.00 N/A N/A 0.029±0.00 0.060±0.00 0.046±0.02
ENSMUSG00000097063 ENSMUST00000180589 N/A N/A 0.535±0.00 1.307±0.74 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.092±0.02
ENSMUSG00000099784 ENSMUST00000188773 N/A N/A N/A 0.312±0.09 N/A N/A N/A 0.036±0.02 N/A 0.035±0.00 N/A N/A N/A N/A

Loading