C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein of the cerebellum 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061524 Zic2 10090 + 14:122475435-122479852 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000075888 Zic2-001 122475435-122479852 protein_coding
  ENSMUST00000137059 Zic2-002 122478100-122479050 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000075888ENSMUST00000137059
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000075888 0.024±0.01 0.039±0.02 0.005±0.00 16.170±10.05 0.027±0.01 N/A 0.013±0.00 0.017±0.02 N/A 0.051±0.03 0.046±0.01 0.017±0.01
ENSMUST00000137059 0.074±0.00 0.193±0.12 0.026±0.00 N/A N/A 0.144±0.05 N/A 0.010±0.00 0.081±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093F CIL_00093F_0002 VISTA 14:121953729-122558284
CIL_0007LI CIL_0007LI_0002 UCNEbase 14:122256414-122883962
CIL_0004FW CIL_0004FW_0003 CGP 14:122456795-122479852

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IMP nervous system development
GO:0007417 IGI central nervous system development
GO:0007601 IMP visual perception
GO:0030154 IMP cell differentiation
GO:0031290 IMP retinal ganglion cell axon guidance
GO:0031490 IDA chromatin DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0048066 IMP developmental pigmentation
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015554 zic2a zic family member 2 (odd-paired homolog, Drosophila), a protein_coding Danio_rerio
ENSDARG00000037178 zic2b zic family member 2 (odd-paired homolog, Drosophila) b protein_coding Danio_rerio
ENSG00000043355 ZIC2 Zic family member 2 protein_coding Homo_sapiens

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