C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein of the cerebellum 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075888 Zic2-001 ENSMUSG00000061524 10090 + 14:122475435-122479852 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverOvaryPlacentaTestisENSMUST00000075888
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Ovary Placenta Testis
ENSMUST00000075888 0.024±0.01 0.039±0.02 0.005±0.00 16.170±10.05 0.027±0.01 0.013±0.00 0.017±0.02 0.051±0.03 0.046±0.01 0.017±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093F CIL_00093F_0002 VISTA 14:121953729-122558284
CIL_0007LI CIL_0007LI_0002 UCNEbase 14:122256414-122883962
CIL_0004FW CIL_0004FW_0003 CGP 14:122456795-122479852

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IMP nervous system development
GO:0007417 IGI central nervous system development
GO:0007601 IMP visual perception
GO:0030154 IMP cell differentiation
GO:0031290 IMP retinal ganglion cell axon guidance
GO:0031490 IDA chromatin DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0048066 IMP developmental pigmentation
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000010774 zic2a-001 protein_coding Danio_rerio 0 721
ENSDART00000022204 zic5-001 protein_coding Danio_rerio 0 388
ENST00000282928 ZIC1-001 protein_coding Homo_sapiens 0 645
ENST00000376335 ZIC2-001 protein_coding Homo_sapiens 0 2556
ENST00000383075 ZIC4-001 protein_coding Homo_sapiens 0 420
ENST00000425731 ZIC4-201 protein_coding Homo_sapiens 0 420
ENST00000462748 ZIC4-002 protein_coding Homo_sapiens 0 307
ENST00000468291 ZIC2-004 processed_transcript Homo_sapiens 0 473
ENST00000473123 ZIC4-003 protein_coding Homo_sapiens 0 420
ENST00000477213 ZIC2-005 processed_transcript Homo_sapiens 0 459
ENST00000481565 ZIC2-003 processed_transcript Homo_sapiens 0 200
ENST00000484399 ZIC4-004 protein_coding Homo_sapiens 0 420
ENST00000490085 ZIC2-002 processed_transcript Homo_sapiens 0 477
ENST00000493664 ZIC4-005 retained_intron Homo_sapiens 0 420
ENST00000525172 ZIC4-202 protein_coding Homo_sapiens 0 420
ENST00000620342 ZIC2-201 protein_coding Homo_sapiens 0 2134

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