C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Zic family member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000043355 ZIC2 9606 + 13:99981772-99986773 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000376335 ZIC2-001 99981772-99986773 protein_coding
  ENST00000468291 ZIC2-004 99984689-99985492 processed_transcript
  ENST00000477213 ZIC2-005 99984789-99985474 processed_transcript
  ENST00000481565 ZIC2-003 99985494-99985904 processed_transcript
  ENST00000490085 ZIC2-002 99984289-99985492 processed_transcript
  ENST00000620342 ZIC2-201 99982065-99985682 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyLungOvaryPlacentaTestisENST00000376335ENST00000468291ENST00000620342
Transcript ID Adipose Adrenal Brain Breast Kidney Lung Ovary Placenta Testis
ENST00000376335 0.007±0.00 0.104±0.00 1.712±1.25 N/A 0.015±0.00 N/A 0.326±0.18 0.100±0.05 0.743±0.00
ENST00000468291 N/A N/A N/A 0.313±0.00 0.288±0.00 N/A N/A N/A N/A
ENST00000620342 N/A 0.208±0.00 N/A N/A N/A 0.022±0.00 0.035±0.00 N/A 0.405±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093F CIL_00093F_0001 VISTA 13:99386191-99989823
CIL_0007LI CIL_0007LI_0001 UCNEbase 13:99687864-100523501
CIL_0004FW CIL_0004FW_0002 CGP 13:99962964-99986773
CIL_0004G2 CIL_0004G2_0002 CGP 13:99981772-100530435

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001843 IEA neural tube closure
GO:0003677 ISS DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0007417 IEA central nervous system development
GO:0007420 TAS brain development
GO:0007601 ISS visual perception
GO:0030154 IEA cell differentiation
GO:0031290 IEA retinal ganglion cell axon guidance
GO:0031490 ISS chromatin DNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0048066 IEA developmental pigmentation
GO:0051091 ISS positive regulation of sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015554 zic2a zic family member 2 (odd-paired homolog, Drosophila), a protein_coding Danio_rerio
ENSDARG00000037178 zic2b zic family member 2 (odd-paired homolog, Drosophila) b protein_coding Danio_rerio
ENSMUSG00000061524 Zic2 zinc finger protein of the cerebellum 2 protein_coding Mus_musculus

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