C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00093F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1444 VISTA 9606 13:99386191-99989823
GeneTranscriptPositionBiotype
ENSG00000043355 (ZIC2)
Zic family member 2 		ENST00000376335 (ZIC2-001) 99981772-99986773 protein_coding
ENST00000468291 (ZIC2-004) 99984689-99985492 processed_transcript
ENST00000477213 (ZIC2-005) 99984789-99985474 processed_transcript
ENST00000481565 (ZIC2-003) 99985494-99985904 processed_transcript
ENST00000490085 (ZIC2-002) 99984289-99985492 processed_transcript
ENST00000620342 (ZIC2-201) 99982065-99985682 protein_coding
ENSG00000125246 (CLYBL)
citrate lyase beta like 		ENST00000339105 (CLYBL-003) 99606696-99892564 protein_coding
ENST00000376354 (CLYBL-002) 99606690-99891613 protein_coding
ENST00000376355 (CLYBL-001) 99606669-99897134 protein_coding
ENST00000416504 (CLYBL-004) 99858861-99865238 protein_coding
ENST00000419700 (CLYBL-007) 99866317-99892894 protein_coding
ENST00000425186 (CLYBL-006) 99871018-99891612 protein_coding
ENST00000443887 (CLYBL-005) 99858861-99865238 protein_coding
ENSG00000125304 (TM9SF2)
transmembrane 9 superfamily member 2 		ENST00000376387 (TM9SF2-001) 99501417-99564006 protein_coding
ENST00000463709 (TM9SF2-003) 99514215-99537862 processed_transcript
ENST00000466555 (TM9SF2-004) 99540511-99541736 processed_transcript
ENSG00000139800 (ZIC5)
Zic family member 5 		ENST00000267294 (ZIC5-001) 99962964-99971909 protein_coding
ENSG00000201245 (SNORA25)
Small nucleolar RNA SNORA25 		ENST00000364375 (SNORA25.1-207) 99783857-99783983 snoRNA
ENSG00000203441 (LINC00449)
long intergenic non-protein coding RNA 449 		ENST00000366259 (LINC00449-005) 99499727-99501052 antisense
ENSG00000227659 (CLYBL-AS2)
CLYBL antisense RNA 2 		ENST00000430125 (CLYBL-AS2-001) 99690081-99690971 antisense
ENSG00000234168 (LINC01039)
long intergenic non-protein coding RNA 1039 		ENST00000437113 (LINC01039-001) 99577112-99580368 lincRNA
ENSG00000234239 (CFL1P8)
cofilin 1 (non-muscle) pseudogene 8 		ENST00000436148 (CFL1P8-001) 99582706-99583180 processed_pseudogene
ENSG00000234303 (CLYBL-AS1)
CLYBL antisense RNA 1 		ENST00000416009 (CLYBL-AS1-001) 99726247-99727491 antisense
ENSG00000238241 (CCR12P)
chemokine (C-C motif) receptor 12, pseudogene 		ENST00000446203 (CCR12P-001) 99407781-99409062 processed_pseudogene
CIL_00093F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1444 VISTA 10090 14:121953729-122558284
GeneTranscriptPositionBiotype
ENSMUSG00000025544 (Tm9sf2)
transmembrane 9 superfamily member 2 		ENSMUST00000026624 (Tm9sf2-001) 122107038-122159604 protein_coding
ENSMUST00000170007 (Tm9sf2-003) 122107138-122137478 nonsense_mediated_decay
ENSMUST00000171318 (Tm9sf2-002) 122107268-122158716 protein_coding
ENSMUSG00000025545 (Clybl)
citrate lyase beta like 		ENSMUST00000026625 (Clybl-201) 122181694-122402232 protein_coding
ENSMUSG00000041650 (Pcca)
propionyl-Coenzyme A carboxylase, alpha polypeptide 		ENSMUST00000038374 (Pcca-001) 122534339-122889944 protein_coding
ENSMUST00000128893 (Pcca-010) 122737900-122813593 retained_intron
ENSMUST00000132444 (Pcca-011) 122790399-122889820 protein_coding
ENSMUST00000135578 (Pcca-008) 122534345-122650284 protein_coding
ENSMUST00000138836 (Pcca-012) 122886903-122889828 retained_intron
ENSMUST00000140517 (Pcca-002) 122875935-122891100 processed_transcript
ENSMUST00000143240 (Pcca-007) 122602919-122664327 processed_transcript
ENSMUST00000147018 (Pcca-004) 122714029-122737995 nonsense_mediated_decay
ENSMUST00000148172 (Pcca-006) 122534324-122582977 retained_intron
ENSMUST00000152383 (Pcca-003) 122714055-122889825 nonsense_mediated_decay
ENSMUST00000154206 (Pcca-005) 122534331-122616809 protein_coding
ENSMUST00000156755 (Pcca-009) 122714119-122813247 processed_transcript
ENSMUST00000177312 (Pcca-013) 122582684-122889828 nonsense_mediated_decay
ENSMUSG00000041703 (Zic5)
zinc finger protein of the cerebellum 5 		ENSMUST00000039118 (Zic5-001) 122456795-122465677 protein_coding
ENSMUST00000143084 (Zic5-002) 122459193-122460021 processed_transcript
ENSMUSG00000041765 (Ubac2)
ubiquitin associated domain containing 2 		ENSMUST00000039803 (Ubac2-201) 121878606-122021034 protein_coding
ENSMUSG00000051212 (Gpr183)
G protein-coupled receptor 183 		ENSMUST00000049872 (Gpr183-201) 121952331-121965193 protein_coding
ENSMUSG00000061524 (Zic2)
zinc finger protein of the cerebellum 2 		ENSMUST00000075888 (Zic2-001) 122475435-122479852 protein_coding
ENSMUST00000137059 (Zic2-002) 122478100-122479050 retained_intron
ENSMUSG00000064052 (Gm5089)
predicted gene 5089 		ENSMUST00000081580 (Gm5089-201) 122434854-122451115 protein_coding
ENSMUSG00000066538 (Gm6254)
predicted gene 6254 		ENSMUST00000168178 (Gm6254-001) 122117938-122119009 processed_pseudogene
ENSMUSG00000071229 (Timm8a2)
translocase of inner mitochondrial membrane 8A2 		ENSMUST00000045976 (Timm8a2-001) 122034674-122038420 protein_coding
ENSMUSG00000075465 (Gm10837)
predicted gene 10837 		ENSMUST00000100294 (Gm10837-201) 122490586-122492121 protein_coding
ENSMUSG00000085555 (2610035F20Rik)
RIKEN cDNA 2610035F20 gene 		ENSMUST00000135485 (2610035F20Rik-002) 122470284-122473579 retained_intron
ENSMUST00000177306 (2610035F20Rik-001) 122470377-122475199 processed_transcript
ENSMUSG00000085615 (A330035P11Rik)
RIKEN cDNA A330035P11 gene 		ENSMUST00000131416 (A330035P11Rik-002) 122104376-122106974 processed_transcript
ENSMUST00000144926 (A330035P11Rik-001) 122103430-122106953 processed_transcript
ENSMUSG00000090674 (Gm17082)
predicted gene 17082 		ENSMUST00000166043 (Gm17082-001) 122121553-122122643 processed_pseudogene
ENSMUSG00000093669 (Gm9399)
predicted gene 9399 		ENSMUST00000175771 (Gm9399-001) 122494613-122495251 processed_pseudogene
ENSMUSG00000095311 (Gm25464)
predicted gene, 25464 		ENSMUST00000175481 (Gm25464-201) 122388054-122388160 snRNA
ENSMUSG00000100585 (RP23-18J12.5)
RIKEN cDNA 1700108J01 gene 		ENSMUST00000187423 (RP23-18J12.5-001) 122229905-122233654 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00093F_0001ENSG00000043355ENST00000376335ENST00000468291ENST00000477213ENST00000481565ENST00000490085ENST00000620342ENSG00000125246ENST00000339105ENST00000376354ENST00000376355ENST00000416504ENST00000419700ENST00000425186ENST00000443887ENSG00000125304ENST00000376387ENST00000463709ENST00000466555ENSG00000139800ENST00000267294ENSG00000201245ENST00000364375ENSG00000203441ENST00000366259ENSG00000227659ENST00000430125ENSG00000234168ENST00000437113ENSG00000234239ENST00000436148ENSG00000234303ENST00000416009ENSG00000238241ENST00000446203CIL_00093F_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00093F_0001ENSG00000043355ENST00000376335ENST00000468291ENST00000620342ENSG00000125246ENST00000339105ENST00000376354ENST00000376355ENST00000416504ENST00000443887ENSG00000125304ENST00000376387ENSG00000139800ENST00000267294ENSG00000201245ENST00000364375ENSG00000203441ENST00000366259ENSG00000227659ENST00000430125ENSG00000234168ENST00000437113ENSG00000234239ENST00000436148ENSG00000234303ENST00000416009ENSG00000238241ENST00000446203CIL_00093F_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000043355 ENST00000376335 0.007±0.00 0.104±0.00 N/A 1.712±1.25 N/A N/A N/A 0.015±0.00 N/A N/A N/A 0.326±0.18 0.100±0.05 0.743±0.00
ENST00000468291 N/A N/A N/A N/A 0.313±0.00 N/A N/A 0.288±0.00 N/A N/A N/A N/A N/A N/A
ENST00000477213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620342 N/A 0.208±0.00 N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A 0.035±0.00 N/A 0.405±0.00
ENSG00000125246 ENST00000339105 1.590±0.00 2.394±0.00 1.063±0.00 1.496±0.86 2.050±0.00 1.142±0.37 2.788±2.44 4.619±1.24 1.925±1.68 1.659±0.00 3.676±0.05 2.807±0.23 1.150±0.69 2.888±0.12
ENST00000376354 0.720±0.00 0.773±0.00 N/A 1.735±0.00 N/A N/A 1.007±0.84 2.800±0.51 1.065±0.00 0.744±0.00 1.383±0.00 0.858±0.00 1.022±0.00 2.084±0.00
ENST00000376355 N/A 0.143±0.00 0.250±0.00 0.230±0.07 0.184±0.00 0.270±0.10 0.182±0.12 0.483±0.15 0.119±0.08 0.074±0.00 0.214±0.03 0.183±0.10 N/A 0.336±0.12
ENST00000416504 N/A N/A 1.945±0.00 N/A N/A 0.627±0.00 N/A N/A N/A N/A N/A N/A 0.574±0.00 N/A
ENST00000419700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443887 N/A N/A N/A N/A 1.315±0.00 N/A N/A N/A N/A N/A N/A N/A 0.633±0.00 1.439±0.00
ENSG00000125304 ENST00000376387 7.928±0.00 26.390±0.00 12.222±0.00 11.366±7.17 15.462±10.04 28.687±0.22 14.450±5.40 18.237±13.01 6.034±1.61 20.458±2.92 2.673±0.50 34.756±24.31 44.324±21.65 25.989±19.50
ENST00000463709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000139800 ENST00000267294 N/A 0.022±0.00 N/A 0.478±0.05 0.018±0.00 N/A N/A N/A N/A N/A 0.005±0.00 0.285±0.24 0.019±0.00 1.440±0.00
ENSG00000201245 ENST00000364375 N/A 0.130±0.00 N/A 0.618±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000203441 ENST00000366259 0.047±0.00 0.208±0.00 0.063±0.00 0.134±0.05 0.111±0.00 0.059±0.00 0.045±0.00 0.274±0.00 0.201±0.00 0.133±0.00 N/A 0.154±0.13 0.137±0.06 0.328±0.04
ENSG00000227659 ENST00000430125 N/A 0.032±0.00 1.131±0.00 N/A 0.065±0.00 0.708±0.00 N/A 1.051±1.00 0.274±0.23 0.967±0.00 N/A 0.060±0.00 N/A N/A
ENSG00000234168 ENST00000437113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.04
ENSG00000234239 ENST00000436148 N/A N/A N/A N/A N/A N/A 0.322±0.00 N/A N/A N/A N/A N/A N/A 0.050±0.00
ENSG00000234303 ENST00000416009 N/A N/A N/A 0.103±0.00 N/A N/A N/A 0.099±0.00 N/A 0.146±0.00 N/A 0.372±0.33 N/A 1.913±0.21
ENSG00000238241 ENST00000446203 N/A 0.146±0.00 N/A N/A 0.053±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.066±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025544 ENSMUST00000026624 13.690±5.80 41.131±22.46 40.018±10.11 17.563±7.19 15.961±8.70 73.040±22.16 7.835±2.33 25.668±5.00 24.794±7.81 31.867±9.39 14.584±5.06 37.039±15.10 45.231±22.65 25.703±14.82
ENSMUST00000170007 38.721±7.03 312.315±60.41 N/A 125.784±0.00 136.712±4.11 364.295±64.69 N/A 75.624±0.00 30.927±8.88 82.674±35.35 N/A 244.221±54.47 306.909±21.06 121.273±0.00
ENSMUST00000171318 13.610±0.34 N/A N/A 8.495±1.91 28.988±8.73 N/A 18.935±4.51 33.220±9.58 37.589±12.43 23.134±3.86 6.068±0.00 30.534±20.73 24.012±0.00 47.719±27.30
ENSMUSG00000025545 ENSMUST00000026625 40.023±18.65 7.839±1.71 23.227±0.47 4.533±0.70 25.136±7.81 13.127±3.02 39.053±2.98 51.485±2.73 17.282±2.01 4.679±0.53 22.900±1.69 9.800±4.58 10.755±3.60 1.574±0.28
ENSMUSG00000041650 ENSMUST00000038374 20.758±2.02 19.746±1.40 6.164±0.65 8.779±2.78 25.185±11.37 11.016±1.52 11.495±6.25 35.986±9.39 21.212±9.73 8.912±1.25 13.561±3.41 13.631±4.09 4.748±2.96 10.151±2.20
ENSMUST00000128893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.403±0.00 18.909±13.22 N/A
ENSMUST00000138836 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177312 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041703 ENSMUST00000039118 0.241±0.01 0.017±0.01 0.002±0.00 1.860±1.23 N/A N/A N/A 0.006±0.00 0.004±0.00 0.010±0.00 N/A 0.031±0.02 0.049±0.03 2.052±0.98
ENSMUST00000143084 0.683±0.03 N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 0.049±0.00 N/A 0.133±0.06 0.124±0.02 6.492±2.92
ENSMUSG00000041765 ENSMUST00000039803 24.494±3.28 50.581±6.35 16.479±0.62 13.422±7.18 30.931±8.51 36.373±2.98 16.890±2.14 34.910±2.93 17.499±6.81 25.613±1.07 13.110±0.51 28.272±10.44 22.091±6.58 36.826±17.06
ENSMUSG00000051212 ENSMUST00000049872 1.791±0.56 0.691±0.15 1.057±0.29 0.194±0.09 8.038±1.43 1.701±0.34 0.455±0.19 0.750±0.22 0.373±0.22 2.107±0.36 0.120±0.15 0.819±0.44 0.171±0.17 0.116±0.05
ENSMUSG00000061524 ENSMUST00000075888 0.024±0.01 0.039±0.02 0.005±0.00 16.170±10.05 0.027±0.01 N/A N/A 0.013±0.00 0.017±0.02 N/A N/A 0.051±0.03 0.046±0.01 0.017±0.01
ENSMUST00000137059 0.074±0.00 0.193±0.12 0.026±0.00 N/A N/A N/A 0.144±0.05 N/A 0.010±0.00 0.081±0.00 N/A N/A N/A N/A
ENSMUSG00000064052 ENSMUST00000081580 0.377±0.00 0.064±0.00 N/A 0.049±0.03 N/A 0.090±0.04 N/A 0.017±0.00 N/A N/A N/A 0.100±0.03 0.003±0.00 N/A
ENSMUSG00000066538 ENSMUST00000168178 0.096±0.02 0.222±0.00 0.814±0.59 0.728±0.55 0.171±0.10 0.321±0.00 0.049±0.00 0.088±0.03 0.694±1.17 0.143±0.00 0.040±0.01 0.191±0.13 0.268±0.22 0.207±0.10
ENSMUSG00000071229 ENSMUST00000045976 0.043±0.00 N/A 0.030±0.00 0.069±0.00 0.187±0.06 0.075±0.00 0.068±0.03 0.081±0.05 0.027±0.02 0.048±0.00 0.070±0.01 0.243±0.14 0.150±0.10 9.065±1.24
ENSMUSG00000075465 ENSMUST00000100294 N/A N/A N/A 0.082±0.00 N/A N/A N/A N/A N/A N/A N/A 0.017±0.00 N/A N/A
ENSMUSG00000085555 ENSMUST00000135485 N/A N/A N/A 0.614±0.37 N/A N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A
ENSMUST00000177306 N/A N/A N/A 1.034±0.52 N/A 0.056±0.00 N/A N/A N/A N/A N/A 0.039±0.00 0.023±0.02 0.031±0.00
ENSMUSG00000085615 ENSMUST00000131416 0.330±0.03 0.997±0.28 0.468±0.16 0.235±0.11 0.475±0.22 N/A 0.047±0.02 N/A 0.369±0.18 N/A 0.078±0.03 0.572±0.30 0.550±0.31 1.500±0.00
ENSMUST00000144926 0.235±0.00 N/A 0.559±0.03 0.126±0.06 0.147±0.00 N/A 0.109±0.06 N/A 0.290±0.13 0.249±0.00 0.103±0.05 0.283±0.13 0.347±0.19 N/A
ENSMUSG00000090674 ENSMUST00000166043 0.074±0.02 N/A 0.498±0.26 0.352±0.20 N/A N/A 0.064±0.02 0.090±0.05 0.400±0.41 0.307±0.23 0.032±0.01 0.260±0.23 0.318±0.24 0.704±1.14
ENSMUSG00000093669 ENSMUST00000175771 N/A N/A N/A 0.021±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000095311 ENSMUST00000175481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.960±0.00 79.829±63.85 N/A N/A
ENSMUSG00000100585 ENSMUST00000187423 N/A N/A 0.037±0.00 0.111±0.00 N/A 0.474±0.09 N/A 0.108±0.01 0.149±0.00 N/A N/A N/A N/A 73.779±13.34

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