C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 1700052N19 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061759 1700052N19Rik 10090 + 10:4432467-4455141 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000095893 1700052N19Rik-001 4432467-4455141 protein_coding
  ENSMUST00000117489 1700052N19Rik-003 4432620-4439973 protein_coding
  ENSMUST00000118544 1700052N19Rik-002 4432513-4455140 protein_coding
  ENSMUST00000131636 1700052N19Rik-005 4434581-4440469 processed_transcript
  ENSMUST00000134484 1700052N19Rik-007 4432635-4435174 retained_intron
  ENSMUST00000143037 1700052N19Rik-004 4432627-4450412 processed_transcript
  ENSMUST00000152294 1700052N19Rik-006 4432640-4453958 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095893ENSMUST00000117489ENSMUST00000118544ENSMUST00000143037ENSMUST00000152294
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095893 3.032±0.65 1.721±0.00 4.725±0.50 3.970±0.79 3.054±2.13 2.046±1.38 1.706±0.56 1.965±0.62 6.684±3.03 2.070±0.89 5.831±0.50 2.711±0.87 4.396±1.44 27.505±14.22
ENSMUST00000117489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.102±2.04 17.555±0.00
ENSMUST00000118544 0.615±0.21 0.906±0.24 0.980±0.35 0.700±0.17 1.181±0.32 1.132±0.08 0.276±0.05 0.555±0.08 0.990±0.42 0.638±0.14 0.687±0.06 1.452±0.45 0.719±0.07 N/A
ENSMUST00000143037 N/A N/A N/A N/A 1.490±0.00 N/A 0.392±0.04 N/A N/A 0.724±0.00 N/A 1.180±0.14 N/A N/A
ENSMUST00000152294 N/A N/A N/A 11.972±0.00 N/A N/A N/A N/A N/A N/A N/A 10.429±0.00 12.685±5.12 45.624±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005EB CIL_0005EB_0002 CGP 10:4401915-4455141
CIL_0005EC CIL_0005EC_0002 CGP 10:4432467-4562231

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055676 C20H6orf211 chromosome 6 open reading frame 211 protein_coding Danio_rerio
ENSG00000146476 C6orf211 chromosome 6 open reading frame 211 protein_coding Homo_sapiens

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