C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tumor necrosis factor, alpha-induced protein 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000062210 Tnfaip8 10090 + 18:49979427-50107173 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087655 Tnfaip8-011 49979491-50051320 processed_transcript
  ENSMUST00000124175 Tnfaip8-005 50031028-50046427 processed_transcript
  ENSMUST00000126666 Tnfaip8-002 50019567-50090794 protein_coding
  ENSMUST00000128377 Tnfaip8-004 50031029-50090686 protein_coding
  ENSMUST00000134348 Tnfaip8-007 50051718-50090357 protein_coding
  ENSMUST00000145726 Tnfaip8-003 50031018-50090851 protein_coding
  ENSMUST00000148159 Tnfaip8-001 50053282-50091782 protein_coding
  ENSMUST00000148989 Tnfaip8-012 49979427-50091001 protein_coding
  ENSMUST00000153545 Tnfaip8-009 49979535-50107173 processed_transcript
  ENSMUST00000153873 Tnfaip8-008 50051721-50090470 protein_coding
  ENSMUST00000155403 Tnfaip8-006 50051710-50053415 retained_intron
  ENSMUST00000179937 Tnfaip8-010 49979529-50093229 protein_coding
  ENSMUST00000180305 Tnfaip8-201 50046740-50047152 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087655ENSMUST00000126666ENSMUST00000128377ENSMUST00000134348ENSMUST00000145726ENSMUST00000148159ENSMUST00000148989ENSMUST00000179937
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087655 N/A N/A N/A 0.337±0.03 N/A N/A N/A N/A 0.058±0.01 N/A N/A 0.355±0.04 N/A 0.095±0.04
ENSMUST00000126666 N/A 1.815±0.03 N/A N/A N/A N/A 16.988±3.46 N/A 0.382±0.05 N/A N/A 1.394±0.00 N/A N/A
ENSMUST00000128377 N/A 1.093±0.00 13.247±0.74 N/A 9.077±1.74 9.168±1.14 N/A N/A 2.019±1.66 4.021±0.69 1.498±0.00 3.604±1.06 N/A 0.390±0.08
ENSMUST00000134348 N/A 0.607±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.000±0.00 N/A N/A
ENSMUST00000145726 8.131±1.56 N/A N/A N/A 7.938±1.06 N/A N/A 129.494±20.92 1.095±0.00 5.483±1.75 0.748±0.00 4.848±1.59 N/A 0.625±0.00
ENSMUST00000148159 5.060±0.39 0.636±0.27 20.031±0.14 2.370±0.26 4.712±1.45 3.470±0.49 10.163±0.68 69.326±8.74 5.006±4.07 2.766±0.42 1.125±0.63 3.956±4.23 33.508±8.10 0.319±0.14
ENSMUST00000148989 15.405±3.40 2.489±1.32 16.074±0.33 2.535±0.56 12.751±3.26 23.410±3.34 9.009±1.25 N/A 5.476±4.55 3.686±1.31 0.478±0.10 2.909±1.80 N/A 0.561±0.16
ENSMUST00000179937 N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.01 N/A N/A 1.060±0.08 N/A 0.114±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LD CIL_0004LD_0002 CGP 18:49832670-50107173
CIL_0004LE CIL_0004LE_0002 CGP 18:49979427-50196269

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 ISS cytoplasm
GO:0032611 IMP interleukin-1 beta production
GO:0043027 ISS cysteine-type endopeptidase inhibitor activity involved in apoptotic process
GO:0043154 ISS negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0050830 IMP defense response to Gram-positive bacterium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000145779 TNFAIP8 tumor necrosis factor, alpha-induced protein 8 protein_coding Homo_sapiens

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