C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor necrosis factor, alpha-induced protein 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128377 Tnfaip8-004 ENSMUSG00000062210 10090 + 18:50031029-50090686 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonLiverLungMuscleOvaryTestisENSMUST00000128377
Transcript ID Adrenal Bladder Breast Colon Liver Lung Muscle Ovary Testis
ENSMUST00000128377 1.093±0.00 13.247±0.74 9.077±1.74 9.168±1.14 2.019±1.66 4.021±0.69 1.498±0.00 3.604±1.06 0.390±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LD CIL_0004LD_0002 CGP 18:49832670-50107173
CIL_0004LE CIL_0004LE_0002 CGP 18:49979427-50196269

Gene Ontology

GO IDEvidence TypeGO Description
GO:0032611 IMP interleukin-1 beta production
GO:0050830 IMP defense response to Gram-positive bacterium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000274456 TNFAIP8-006 protein_coding Homo_sapiens 0 523
ENST00000388882 TNFAIP8-008 protein_coding Homo_sapiens 0 316
ENST00000415806 TNFAIP8-003 protein_coding Homo_sapiens 0 525
ENST00000503646 TNFAIP8-002 protein_coding Homo_sapiens 0 525
ENST00000504642 TNFAIP8-004 protein_coding Homo_sapiens 0 525
ENST00000504771 TNFAIP8-001 protein_coding Homo_sapiens 0 525
ENST00000513374 TNFAIP8-007 protein_coding Homo_sapiens 0 553

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