C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 22 (organic cation transporter), member 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076493 Slc22a21-001 ENSMUSG00000063652 10090 - 11:53949965-53980332 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076493
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076493 0.538±0.14 1.082±0.45 4.871±0.15 0.427±0.25 0.401±0.00 1.960±1.26 0.180±0.04 1.020±0.14 0.631±0.45 0.529±0.35 0.117±0.05 1.117±0.72 0.915±0.50 27.827±13.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RF CIL_0007RF_0002 VISTA 11:53756663-54359415
CIL_00093D CIL_00093D_0002 VISTA 11:53760072-54361368
CIL_0000HR CIL_0000HR_0003 CGP 11:53864542-53980332
CIL_0000HR CIL_0000HR_0004 CGP 11:53949965-54028090

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005777 IDA peroxisome
GO:0015226 IDA carnitine transmembrane transporter activity
GO:0015879 IDA carnitine transport
GO:0016021 IEA integral component of membrane
GO:0031231 IDA intrinsic component of peroxisomal membrane
GO:1902603 IDA carnitine transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000200652 SLC22A4-001 protein_coding Homo_sapiens 0 680
ENST00000245407 SLC22A5-001 protein_coding Homo_sapiens 0 1476
ENST00000435065 SLC22A5-201 protein_coding Homo_sapiens 0 1053
ENST00000437841 SLC22A5-008 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000448810 SLC22A5-002 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000461013 SLC22A5-006 retained_intron Homo_sapiens 0 941
ENST00000475308 SLC22A5-003 retained_intron Homo_sapiens 0 508
ENST00000479605 SLC22A5-007 processed_transcript Homo_sapiens 0 486

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