C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TRM2 tRNA methyltransferase 2B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000067369 Trmt2b 10090 - X:134222339-134276984 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087540 Trmt2b-005 134262488-134276984 protein_coding
  ENSMUST00000087541 Trmt2b-001 134223095-134276982 protein_coding
  ENSMUST00000113252 Trmt2b-004 134223100-134276920 protein_coding
  ENSMUST00000128115 Trmt2b-002 134222339-134276982 nonsense_mediated_decay
  ENSMUST00000145066 Trmt2b-003 134223096-134276927 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087540ENSMUST00000087541ENSMUST00000113252ENSMUST00000128115ENSMUST00000145066
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.885±0.00 N/A 0.924±0.00
ENSMUST00000087541 4.155±1.96 5.138±1.08 6.999±0.79 2.126±1.36 4.675±1.55 3.636±1.27 7.053±0.67 4.078±1.43 3.306±1.13 2.861±0.58 3.539±0.76 5.565±1.57 2.105±0.51 0.782±0.24
ENSMUST00000113252 0.832±0.00 1.650±0.33 1.277±0.00 0.379±0.00 1.599±0.43 2.477±1.10 N/A 2.160±0.77 1.552±0.46 2.043±0.21 0.611±0.09 1.845±0.49 0.784±0.12 N/A
ENSMUST00000128115 N/A N/A 1.379±0.28 0.245±0.00 0.810±0.00 0.849±0.11 N/A 1.012±0.00 0.691±0.14 N/A 0.367±0.02 1.784±0.00 0.336±0.06 N/A
ENSMUST00000145066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.967±0.00 0.605±0.00 0.082±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AZ CIL_0007AZ_0002 CGP X:134187501-134276984
CIL_0007B0 CIL_0007B0_0002 CGP X:134222339-134305969

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0008033 IEA tRNA processing
GO:0008150 ND biological_process
GO:0030697 IEA S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033967 trmt2b TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae) protein_coding Danio_rerio
ENSG00000188917 TRMT2B tRNA methyltransferase 2 homolog B (S. cerevisiae) protein_coding Homo_sapiens

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