C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TRM2 tRNA methyltransferase 2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113252 Trmt2b-004 ENSMUSG00000067369 10090 - X:134223100-134276920 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000113252
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000113252 0.832±0.00 1.650±0.33 1.277±0.00 0.379±0.00 1.599±0.43 2.477±1.10 2.160±0.77 1.552±0.46 2.043±0.21 0.611±0.09 1.845±0.49 0.784±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AZ CIL_0007AZ_0002 CGP X:134187501-134276984
CIL_0007B0 CIL_0007B0_0002 CGP X:134222339-134305969

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0008033 IEA tRNA processing
GO:0008150 ND biological_process
GO:0030697 IEA S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372935 TRMT2B-001 protein_coding Homo_sapiens 0 1317
ENST00000372936 TRMT2B-003 protein_coding Homo_sapiens 0 1317
ENST00000372939 TRMT2B-004 protein_coding Homo_sapiens 0 1035
ENST00000478422 TRMT2B-005 processed_transcript Homo_sapiens 0 409
ENST00000545398 TRMT2B-201 protein_coding Homo_sapiens 0 1317

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