C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007AZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000174225-ENSG00000188917 CGP 9606 X:100969708-101052116
GeneTranscriptPositionBiotype
ENSG00000174225 (ARL13A)
ADP-ribosylation factor-like 13A 		ENST00000372953 (ARL13A-004) 100986796-100990679 protein_coding
ENST00000450049 (ARL13A-001) 100969711-100990806 protein_coding
ENST00000450457 (ARL13A-003) 100969708-100990829 nonsense_mediated_decay
ENST00000494863 (ARL13A-002) 100987404-100990829 nonsense_mediated_decay
ENSG00000188917 (TRMT2B)
tRNA methyltransferase 2 homolog B (S. cerevisiae) 		ENST00000372935 (TRMT2B-001) 101009542-101052070 protein_coding
ENST00000372936 (TRMT2B-003) 101009542-101052083 protein_coding
ENST00000372939 (TRMT2B-004) 101009350-101052054 protein_coding
ENST00000478422 (TRMT2B-005) 101023586-101052082 processed_transcript
ENST00000488615 (TRMT2B-006) 101035623-101037539 processed_transcript
ENST00000545398 (TRMT2B-201) 101009346-101052116 protein_coding
ENSG00000225839 (TRMT2B-AS1)
TRMT2B antisense RNA 1 		ENST00000443801 (TRMT2B-AS1-001) 101043564-101094476 sense_overlapping
CIL_0007AZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000052549-ENSMUSG00000067369 CGP 10090 X:134187501-134276984
GeneTranscriptPositionBiotype
ENSMUSG00000031257 (Nox1)
NADPH oxidase 1 		ENSMUST00000033610 (Nox1-001) 134086421-134111854 protein_coding
ENSMUST00000113275 (Nox1-002) 134087054-134111765 protein_coding
ENSMUST00000159231 (Nox1-004) 134107733-134137711 protein_coding
ENSMUST00000159259 (Nox1-005) 134087146-134111708 protein_coding
ENSMUST00000162833 (Nox1-003) 134107733-134221956 protein_coding
ENSMUSG00000052549 (Arl13a)
ADP-ribosylation factor-like 13A 		ENSMUST00000064476 (Arl13a-001) 134187501-134208028 protein_coding
ENSMUSG00000067369 (Trmt2b)
TRM2 tRNA methyltransferase 2B 		ENSMUST00000087540 (Trmt2b-005) 134262488-134276984 protein_coding
ENSMUST00000087541 (Trmt2b-001) 134223095-134276982 protein_coding
ENSMUST00000113252 (Trmt2b-004) 134223100-134276920 protein_coding
ENSMUST00000128115 (Trmt2b-002) 134222339-134276982 nonsense_mediated_decay
ENSMUST00000145066 (Trmt2b-003) 134223096-134276927 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007AZ_0001ENSG00000174225ENST00000372953ENST00000450049ENST00000450457ENST00000494863ENSG00000188917ENST00000372935ENST00000372936ENST00000372939ENST00000478422ENST00000488615ENST00000545398ENSG00000225839ENST00000443801CIL_0007AZ_0002ENSMUSG00000031257ENSMUST00000033610ENSMUST00000113275ENSMUST00000159231ENSMUST00000159259ENSMUST00000162833ENSMUSG00000052549ENSMUST00000064476ENSMUSG00000067369ENSMUST00000087540ENSMUST00000087541ENSMUST00000113252ENSMUST00000128115ENSMUST00000145066
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007AZ_0001ENSG00000174225ENST00000372953ENST00000450049ENST00000450457ENST00000494863ENSG00000188917ENST00000372935ENST00000372936ENST00000372939ENST00000478422ENST00000545398ENSG00000225839ENST00000443801CIL_0007AZ_0002ENSMUSG00000031257ENSMUST00000033610ENSMUSG00000052549ENSMUST00000064476ENSMUSG00000067369ENSMUST00000087540ENSMUST00000087541ENSMUST00000113252ENSMUST00000128115ENSMUST00000145066
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000174225 ENST00000372953 N/A N/A N/A N/A N/A 0.090±0.00 N/A N/A N/A N/A 1.224±0.00 0.424±0.00 N/A N/A
ENST00000450049 N/A 0.017±0.00 N/A N/A 0.041±0.00 0.113±0.00 N/A 0.057±0.00 N/A N/A N/A N/A N/A 2.473±0.82
ENST00000450457 N/A N/A N/A 0.037±0.00 0.079±0.00 0.018±0.00 N/A N/A 0.042±0.00 N/A N/A N/A N/A 1.070±0.00
ENST00000494863 N/A 0.090±0.00 N/A N/A 0.053±0.00 N/A N/A N/A 0.056±0.00 0.087±0.00 N/A 0.041±0.00 N/A 1.217±0.00
ENSG00000188917 ENST00000372935 N/A N/A N/A 0.598±0.00 N/A 0.574±0.00 1.198±1.11 1.241±0.00 N/A 0.731±0.00 1.299±0.00 1.745±0.62 0.539±0.00 1.040±0.00
ENST00000372936 0.959±0.00 1.562±0.00 N/A 0.288±0.00 1.207±0.00 N/A N/A N/A N/A 0.486±0.00 1.109±0.00 N/A 0.398±0.00 0.760±0.37
ENST00000372939 0.623±0.00 2.265±0.00 N/A 0.552±0.00 N/A N/A 1.033±0.00 N/A 0.594±0.00 0.240±0.00 N/A N/A 0.844±0.00 0.718±0.00
ENST00000478422 N/A N/A N/A N/A N/A 1.319±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545398 N/A N/A N/A 0.590±0.23 N/A N/A 0.651±0.14 1.598±1.19 N/A 0.662±0.22 0.416±0.00 1.276±0.33 0.407±0.00 N/A
ENSG00000225839 ENST00000443801 1.326±0.00 3.166±0.00 N/A 0.724±0.00 1.577±0.00 0.607±0.00 0.594±0.00 0.582±0.00 0.260±0.00 0.937±0.00 0.624±0.00 5.611±0.00 N/A 1.115±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031257 ENSMUST00000033610 N/A N/A N/A N/A N/A 5.257±1.36 N/A N/A N/A N/A 0.550±0.00 N/A N/A N/A
ENSMUST00000113275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000052549 ENSMUST00000064476 N/A N/A 0.008±0.00 0.027±0.03 0.059±0.03 N/A 0.018±0.00 0.046±0.02 0.030±0.03 N/A 0.017±0.00 N/A 0.011±0.01 7.602±0.48
ENSMUSG00000067369 ENSMUST00000087540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.885±0.00 N/A 0.924±0.00
ENSMUST00000087541 4.155±1.96 5.138±1.08 6.999±0.79 2.126±1.36 4.675±1.55 3.636±1.27 7.053±0.67 4.078±1.43 3.306±1.13 2.861±0.58 3.539±0.76 5.565±1.57 2.105±0.51 0.782±0.24
ENSMUST00000113252 0.832±0.00 1.650±0.33 1.277±0.00 0.379±0.00 1.599±0.43 2.477±1.10 N/A 2.160±0.77 1.552±0.46 2.043±0.21 0.611±0.09 1.845±0.49 0.784±0.12 N/A
ENSMUST00000128115 N/A N/A 1.379±0.28 0.245±0.00 0.810±0.00 0.849±0.11 N/A 1.012±0.00 0.691±0.14 N/A 0.367±0.02 1.784±0.00 0.336±0.06 N/A
ENSMUST00000145066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.967±0.00 0.605±0.00 0.082±0.00

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