C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein of the cerebellum 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088627 Zic3-001 ENSMUSG00000067860 10090 + X:58030643-58036559 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverPlacentaTestisENSMUST00000088627
Transcript ID Brain Liver Placenta Testis
ENSMUST00000088627 5.361±3.78 0.017±0.00 0.189±0.10 0.300±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PM CIL_0000PM_0003 CGP X:57496668-58041736
CIL_0007NT CIL_0007NT_0002 UCNEbase X:57709462-58446094

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001947 IMP heart looping
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007368 IMP determination of left/right symmetry
GO:0007389 IMP pattern specification process
GO:0009952 IGI anterior/posterior pattern specification
GO:0030154 IEA cell differentiation
GO:0030324 IEA lung development
GO:0035469 IEA determination of pancreatic left/right asymmetry
GO:0035545 IMP determination of left/right asymmetry in nervous system
GO:0043565 ISS sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0071907 IEA determination of digestive tract left/right asymmetry
GO:0071910 IEA determination of liver left/right asymmetry

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000022204 zic5-001 protein_coding Danio_rerio 0 313
ENST00000282928 ZIC1-001 protein_coding Homo_sapiens 0 438
ENST00000287538 ZIC3-003 protein_coding Homo_sapiens 0 3916
ENST00000370606 ZIC3-001 protein_coding Homo_sapiens 0 1879
ENST00000478471 ZIC3-002 processed_transcript Homo_sapiens 0 470
ENST00000488404 ZIC1-002 protein_coding Homo_sapiens 1e-38 163

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