C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XXVIII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115537 Col28a1-001 ENSMUSG00000068794 10090 - 6:7997808-8192617 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115537
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115537 0.375±0.16 0.218±0.07 0.385±0.00 0.959±0.15 0.487±0.10 0.128±0.03 0.098±0.04 0.029±0.02 0.168±0.02 0.343±0.12 0.225±0.22 0.017±0.01 0.348±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002V5 CIL_0002V5_0002 CGP 6:7997808-8236274

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005581 IEA collagen trimer
GO:0005604 IDA basement membrane
GO:0007155 IEA cell adhesion
GO:0008150 ND biological_process
GO:0010951 IEA negative regulation of endopeptidase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399429 COL28A1-001 protein_coding Homo_sapiens 0 3544
ENST00000435823 COL28A1-004 protein_coding Homo_sapiens 0 305
ENST00000444268 COL28A1-002 nonsense_mediated_decay Homo_sapiens 0 1478

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