C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 2, group F, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125176 Nr2f1-002 ENSMUSG00000069171 10090 - 13:78189733-78196373 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000125176
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000125176 3.050±0.92 23.528±1.27 7.399±1.19 142.020±9.68 7.715±2.28 1.878±0.46 2.859±1.03 1.902±0.50 0.949±0.67 8.761±1.12 0.210±0.00 15.865±2.43 0.787±0.41 0.176±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N1 CIL_0007N1_0005 UCNEbase 13:76802395-80648053
CIL_0008SK CIL_0008SK_0002 VISTA 13:77592212-78193533
CIL_00083A CIL_00083A_0002 VISTA 13:78023865-78625614
CIL_0008KX CIL_0008KX_0002 VISTA 13:78144587-78747858

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001764 IDA neuron migration
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0021796 IMP cerebral cortex regionalization
GO:0030522 IEA intracellular receptor signaling pathway
GO:0030900 IDA forebrain development
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000133384 nr2f1a-001 protein_coding Danio_rerio 0 758
ENSDART00000059976 nr2f2-201 protein_coding Danio_rerio 0 501
ENSDART00000130163 nr2f2-001 protein_coding Danio_rerio 0 501
ENST00000327111 NR2F1-001 protein_coding Homo_sapiens 0 1190
ENST00000502982 NR2F1-003 processed_transcript Homo_sapiens 0 717
ENST00000506162 NR2F1-005 processed_transcript Homo_sapiens 0 392
ENST00000512697 NR2F1-002 processed_transcript Homo_sapiens 0 673
ENST00000615873 NR2F1-201 protein_coding Homo_sapiens 0 1190

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