C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SRY (sex determining region Y)-box 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000070643 Sox13 10090 - 1:133382303-133424377 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000094551 Sox13-201 133383651-133393270 protein_coding
  ENSMUST00000126530 Sox13-003 133384537-133386434 retained_intron
  ENSMUST00000144386 Sox13-001 133382303-133393218 protein_coding
  ENSMUST00000145922 Sox13-004 133383978-133385526 retained_intron
  ENSMUST00000153799 Sox13-002 133382303-133424377 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000094551ENSMUST00000144386ENSMUST00000145922ENSMUST00000153799
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094551 N/A N/A N/A 2.494±0.00 N/A N/A N/A N/A N/A N/A N/A 6.167±0.00 2.396±0.92 0.660±0.00
ENSMUST00000144386 1.846±0.00 3.429±1.37 1.653±0.02 2.821±1.49 2.798±1.29 5.620±0.94 2.858±0.18 3.672±1.23 1.006±0.38 18.692±4.37 0.833±0.35 7.118±2.04 3.195±2.39 0.586±0.32
ENSMUST00000145922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.460±1.62 N/A
ENSMUST00000153799 7.453±3.73 2.884±1.10 2.165±0.61 4.069±1.53 2.847±1.11 11.536±3.77 0.786±0.00 4.994±1.89 0.850±0.49 18.042±1.63 1.781±0.65 8.285±3.52 1.921±1.04 0.550±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W2 CIL_0008W2_0002 VISTA 1:133249313-133850886

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IDA sequence-specific DNA binding
GO:0045586 IDA regulation of gamma-delta T cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030297 AL929022.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000143842 SOX13 SRY (sex determining region Y)-box 13 protein_coding Homo_sapiens

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