C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SRY (sex determining region Y)-box 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143842 SOX13 9606 + 1:204073115-204127743 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272193 SOX13-004 204116065-204126152 processed_transcript
  ENST00000367203 SOX13-001 204073115-204119859 processed_transcript
  ENST00000367204 SOX13-002 204073604-204127743 protein_coding
  ENST00000480326 SOX13-003 204116507-204122917 nonsense_mediated_decay
  ENST00000525258 SOX13-009 204122386-204123729 retained_intron
  ENST00000525442 SOX13-007 204074026-204113088 protein_coding
  ENST00000528591 SOX13-008 204078129-204116627 protein_coding
  ENST00000530882 SOX13-006 204073156-204117158 processed_transcript
  ENST00000534185 SOX13-005 204073153-204114570 processed_transcript
  ENST00000618875 SOX13-201 204112916-204127741 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272193ENST00000367203ENST00000367204ENST00000528591ENST00000618875
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272193 N/A N/A N/A N/A N/A N/A N/A 0.791±0.00 N/A N/A 0.499±0.00 N/A N/A 1.773±0.00
ENST00000367203 N/A N/A 0.665±0.00 0.798±0.00 N/A 0.236±0.00 0.051±0.00 N/A 0.437±0.00 0.453±0.00 N/A 0.932±0.00 N/A N/A
ENST00000367204 8.499±0.00 7.616±0.00 N/A 1.994±1.74 2.088±1.65 4.690±3.48 N/A 6.372±0.00 3.407±1.68 5.310±0.00 3.396±0.00 8.798±0.00 8.128±1.03 5.771±0.00
ENST00000528591 N/A N/A N/A N/A N/A N/A 0.877±0.00 1.452±0.00 N/A N/A 1.324±0.00 N/A N/A N/A
ENST00000618875 4.438±0.00 1.836±0.00 N/A 0.396±0.00 4.754±0.00 N/A 3.907±0.00 7.816±0.00 N/A 7.714±6.43 1.195±1.08 10.818±3.26 18.365±8.05 1.106±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W2 CIL_0008W2_0001 VISTA 1:203635137-204239984
CIL_0000TU CIL_0000TU_0002 CGP 1:203861603-204127743
CIL_00057L CIL_00057L_0002 CGP 1:204073115-204152003

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009653 TAS anatomical structure morphogenesis
GO:0043565 ISS sequence-specific DNA binding
GO:0045586 IEA regulation of gamma-delta T cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030297 AL929022.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000070643 Sox13 SRY (sex determining region Y)-box 13 protein_coding Mus_musculus

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