C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144386 Sox13-001 ENSMUSG00000070643 10090 - 1:133382303-133393218 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000144386
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000144386 1.846±0.00 3.429±1.37 1.653±0.02 2.821±1.49 2.798±1.29 5.620±0.94 2.858±0.18 3.672±1.23 1.006±0.38 18.692±4.37 0.833±0.35 7.118±2.04 3.195±2.39 0.586±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W2 CIL_0008W2_0002 VISTA 1:133249313-133850886

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding
GO:0045586 IDA regulation of gamma-delta T cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272193 SOX13-004 processed_transcript Homo_sapiens 0 1483
ENST00000367203 SOX13-001 processed_transcript Homo_sapiens 0 715
ENST00000367204 SOX13-002 protein_coding Homo_sapiens 0 1718
ENST00000480326 SOX13-003 nonsense_mediated_decay Homo_sapiens 0 473
ENST00000525258 SOX13-009 retained_intron Homo_sapiens 0 374
ENST00000528591 SOX13-008 protein_coding Homo_sapiens 0 387
ENST00000534185 SOX13-005 processed_transcript Homo_sapiens 9.99995e-41 171
ENST00000618875 SOX13-201 protein_coding Homo_sapiens 0 1718

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