C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153799 Sox13-002 ENSMUSG00000070643 10090 - 1:133382303-133424377 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000153799
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000153799 7.453±3.73 2.884±1.10 2.165±0.61 4.069±1.53 2.847±1.11 11.536±3.77 0.786±0.00 4.994±1.89 0.850±0.49 18.042±1.63 1.781±0.65 8.285±3.52 1.921±1.04 0.550±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W2 CIL_0008W2_0002 VISTA 1:133249313-133850886

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IDA sequence-specific DNA binding
GO:0045586 IDA regulation of gamma-delta T cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272193 SOX13-004 processed_transcript Homo_sapiens 0 1825
ENST00000367203 SOX13-001 processed_transcript Homo_sapiens 0 880
ENST00000367204 SOX13-002 protein_coding Homo_sapiens 0 2228
ENST00000480326 SOX13-003 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000525258 SOX13-009 retained_intron Homo_sapiens 0 374
ENST00000525442 SOX13-007 protein_coding Homo_sapiens 6.99949e-42 174
ENST00000528591 SOX13-008 protein_coding Homo_sapiens 0 424
ENST00000534185 SOX13-005 processed_transcript Homo_sapiens 9.99995e-41 171
ENST00000618875 SOX13-201 protein_coding Homo_sapiens 0 2185

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