C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 47
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000070780 Rbm47 10090 - 5:66016549-66173117 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000094756 Rbm47-005 66018751-66098179 protein_coding
  ENSMUST00000094757 Rbm47-004 66018646-66150978 protein_coding
  ENSMUST00000113724 Rbm47-002 66018616-66081000 protein_coding
  ENSMUST00000113725 Rbm47-006 66018602-66150898 protein_coding
  ENSMUST00000113726 Rbm47-001 66016549-66173117 protein_coding
  ENSMUST00000122855 Rbm47-008 66046094-66151787 processed_transcript
  ENSMUST00000127275 Rbm47-003 66027220-66080984 protein_coding
  ENSMUST00000131838 Rbm47-010 66027240-66151323 protein_coding
  ENSMUST00000132606 Rbm47-007 66025542-66150955 retained_intron
  ENSMUST00000136402 Rbm47-009 66046209-66151781 processed_transcript
  ENSMUST00000145625 Rbm47-011 66026785-66054550 protein_coding
  ENSMUST00000167950 Rbm47-201 66016557-66151924 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000094756ENSMUST00000094757ENSMUST00000113724ENSMUST00000113725ENSMUST00000113726ENSMUST00000145625ENSMUST00000167950
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094756 7.395±3.54 7.718±0.11 N/A 0.117±0.00 6.770±1.56 26.367±2.84 0.457±0.16 13.474±1.30 N/A 4.611±1.09 0.049±0.00 8.819±4.38 5.833±2.46 2.087±1.02
ENSMUST00000094757 2.960±0.55 26.273±4.15 N/A N/A 3.631±0.87 N/A N/A N/A N/A 4.416±1.51 N/A 4.945±1.67 N/A N/A
ENSMUST00000113724 N/A N/A 2.500±0.00 N/A N/A 45.068±6.63 N/A 26.578±7.30 5.934±5.02 3.387±0.00 N/A 9.213±3.38 8.108±0.84 N/A
ENSMUST00000113725 N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A N/A N/A 0.030±0.00 N/A 4.304±0.00 N/A
ENSMUST00000113726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.117±0.72
ENSMUST00000145625 N/A N/A N/A 0.412±0.00 N/A N/A N/A N/A N/A 8.763±0.00 0.086±0.00 N/A N/A N/A
ENSMUST00000167950 3.149±1.50 10.623±1.68 5.140±0.55 0.359±0.16 4.170±1.54 16.930±2.70 0.199±0.00 19.405±9.75 4.627±4.36 3.750±0.64 0.045±0.02 4.017±0.97 10.214±5.79 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038Q CIL_00038Q_0002 CGP 5:66016549-66298016

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061985 RBM47 RNA binding motif protein 47 protein_coding Danio_rerio
ENSG00000163694 RBM47 RNA binding motif protein 47 protein_coding Homo_sapiens

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