C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167950 Rbm47-201 ENSMUSG00000070780 10090 - 5:66016557-66151924 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000167950
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000167950 3.149±1.50 10.623±1.68 5.140±0.55 0.359±0.16 4.170±1.54 16.930±2.70 0.199±0.00 19.405±9.75 4.627±4.36 3.750±0.64 0.045±0.02 4.017±0.97 10.214±5.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038Q CIL_00038Q_0002 CGP 5:66016549-66298016

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110698 rbm46-001 protein_coding Danio_rerio 0 231
ENST00000295971 RBM47-006 protein_coding Homo_sapiens 0 2381
ENST00000381793 RBM47-001 protein_coding Homo_sapiens 0 2375
ENST00000381795 RBM47-002 protein_coding Homo_sapiens 0 1437
ENST00000505220 RBM47-010 protein_coding Homo_sapiens 0 374
ENST00000505414 RBM47-009 protein_coding Homo_sapiens 0 621
ENST00000507180 RBM47-014 protein_coding Homo_sapiens 0 505
ENST00000510871 RBM47-007 nonsense_mediated_decay Homo_sapiens 0 1443
ENST00000511598 RBM47-008 protein_coding Homo_sapiens 0 671
ENST00000511902 RBM47-012 protein_coding Homo_sapiens 0 267
ENST00000513473 RBM47-015 protein_coding Homo_sapiens 0 702
ENST00000514014 RBM47-005 protein_coding Homo_sapiens 0 2170
ENST00000514782 RBM47-013 protein_coding Homo_sapiens 0 558
ENST00000515053 RBM47-011 protein_coding Homo_sapiens 0 832

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