C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 47
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163694 RBM47 9606 - 4:40423267-40630875 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295971 RBM47-006 40424338-40629864 protein_coding
  ENST00000381793 RBM47-001 40423267-40514758 protein_coding
  ENST00000381795 RBM47-002 40423267-40515973 protein_coding
  ENST00000505220 RBM47-010 40438716-40630786 protein_coding
  ENST00000505414 RBM47-009 40438418-40630845 protein_coding
  ENST00000507180 RBM47-014 40438523-40475749 protein_coding
  ENST00000510871 RBM47-007 40423681-40629864 nonsense_mediated_decay
  ENST00000511598 RBM47-008 40438553-40630875 protein_coding
  ENST00000511902 RBM47-012 40438715-40630786 protein_coding
  ENST00000513044 RBM47-004 40542523-40629529 retained_intron
  ENST00000513473 RBM47-015 40438315-40514543 protein_coding
  ENST00000514014 RBM47-005 40425412-40630623 protein_coding
  ENST00000514782 RBM47-013 40438482-40630123 protein_coding
  ENST00000515053 RBM47-011 40438242-40630316 protein_coding
  ENST00000515809 RBM47-016 40432703-40466645 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295971ENST00000381793ENST00000381795ENST00000510871ENST00000513044ENST00000514014
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295971 N/A N/A 5.048±0.00 N/A 3.405±0.00 8.439±0.00 N/A 4.688±0.00 0.775±0.00 5.333±0.00 N/A 5.239±0.41 14.621±0.00 1.992±0.00
ENST00000381793 N/A N/A N/A N/A N/A N/A N/A 7.437±0.00 0.344±0.00 N/A N/A 0.913±0.00 N/A N/A
ENST00000381795 0.942±0.00 3.582±0.00 N/A 0.112±0.00 3.438±0.00 N/A 0.102±0.00 36.142±0.00 N/A 1.364±0.00 N/A 1.475±0.37 1.197±0.00 0.307±0.00
ENST00000510871 N/A N/A N/A 0.232±0.00 1.030±0.00 N/A 0.196±0.00 1.790±0.00 N/A N/A 0.122±0.00 3.034±1.52 2.131±0.39 0.890±0.00
ENST00000513044 N/A N/A N/A N/A N/A N/A 0.261±0.00 N/A 0.791±0.00 N/A N/A N/A N/A N/A
ENST00000514014 N/A N/A 13.805±0.00 0.206±0.00 N/A 12.733±0.00 N/A 2.981±0.00 1.522±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038Q CIL_00038Q_0001 CGP 4:40423267-40809985

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061985 RBM47 RNA binding motif protein 47 protein_coding Danio_rerio
ENSMUSG00000070780 Rbm47 RNA binding motif protein 47 protein_coding Mus_musculus

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