C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00045L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100883-ENSG00000151327 CGP 9606 14:34981957-35113130
GeneTranscriptPositionBiotype
ENSG00000100883 (SRP54)
signal recognition particle 54kDa 		ENST00000216774 (SRP54-201) 34982898-35029565 protein_coding
ENST00000546080 (SRP54-202) 34982898-35029565 protein_coding
ENST00000553544 (SRP54-009) 34982973-34996924 retained_intron
ENST00000553923 (SRP54-012) 35014758-35019391 retained_intron
ENST00000554803 (SRP54-005) 34982682-34999610 protein_coding
ENST00000555317 (SRP54-008) 34982992-34999866 retained_intron
ENST00000555535 (SRP54-007) 34993244-35004608 processed_transcript
ENST00000555557 (SRP54-002) 34983025-35029454 protein_coding
ENST00000555746 (SRP54-006) 34982701-35000987 protein_coding
ENST00000556380 (SRP54-010) 34983105-35013434 nonsense_mediated_decay
ENST00000556445 (SRP54-011) 35018629-35019358 retained_intron
ENST00000556992 (SRP54-013) 35027730-35029135 retained_intron
ENST00000556994 (SRP54-001) 34981957-35029567 protein_coding
ENSG00000151327 (FAM177A1)
family with sequence similarity 177, member A1 		ENST00000280987 (FAM177A1-001) 35046403-35083383 protein_coding
ENST00000382406 (FAM177A1-010) 35046378-35081387 protein_coding
ENST00000396472 (FAM177A1-201) 35044907-35083381 protein_coding
ENST00000553852 (FAM177A1-004) 35046593-35053431 nonsense_mediated_decay
ENST00000553901 (FAM177A1-009) 35099676-35110726 retained_intron
ENST00000553955 (FAM177A1-005) 35046681-35079012 nonsense_mediated_decay
ENST00000554052 (FAM177A1-003) 35046453-35050396 protein_coding
ENST00000554794 (FAM177A1-007) 35053200-35081103 protein_coding
ENST00000555211 (FAM177A1-002) 35045117-35053408 protein_coding
ENST00000555260 (FAM177A1-008) 35081081-35113130 nonsense_mediated_decay
ENST00000556858 (FAM177A1-006) 35046604-35054991 nonsense_mediated_decay
ENSG00000258704 (SRP54-AS1)
SRP54 antisense RNA 1 (head to head) 		ENST00000554945 (SRP54-AS1-001) 34963914-34982492 antisense
ENST00000555015 (SRP54-AS1-002) 34921610-34982515 antisense
ENST00000556355 (SRP54-AS1-004) 34920858-34982452 antisense
ENST00000556705 (SRP54-AS1-003) 34963708-34982532 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_00045L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000073079-ENSMUSG00000095595 CGP 10090 12:55089202-55142078
GeneTranscriptPositionBiotype
ENSMUSG00000073079 (Srp54a)
signal recognition particle 54A 		ENSMUST00000021407 (Srp54a-201) 55089202-55112891 protein_coding
ENSMUSG00000095595 (Fam177a)
family with sequence similarity 177, member A 		ENSMUST00000177768 (Fam177a-201) 55124528-55142078 protein_coding

Mus musculus Ensembl (GRCm38)

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CIL_00045L_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000079108-ENSMUSG00000079108 CGP 10090 12:55155104-55263020
GeneTranscriptPositionBiotype
ENSMUSG00000079108 (Srp54b)
signal recognition particle 54B 		ENSMUST00000110708 (Srp54b-201) 55155104-55189213 protein_coding
ENSMUST00000164243 (Srp54b-202) 55239326-55263020 protein_coding
ENSMUSG00000094103 (1700047I17Rik2)
RIKEN cDNA 1700047I17 gene 2 		ENSMUST00000177978 (1700047I17Rik2-201) 55199533-55214076 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00045L_0001ENSG00000100883ENST00000216774ENST00000546080ENST00000553544ENST00000553923ENST00000554803ENST00000555317ENST00000555535ENST00000555557ENST00000555746ENST00000556380ENST00000556445ENST00000556992ENST00000556994ENSG00000151327ENST00000280987ENST00000382406ENST00000396472ENST00000553852ENST00000553901ENST00000553955ENST00000554052ENST00000554794ENST00000555211ENST00000555260ENST00000556858ENSG00000258704ENST00000554945ENST00000555015ENST00000556355ENST00000556705CIL_00045L_0002ENSMUSG00000073079ENSMUST00000021407ENSMUSG00000095595ENSMUST00000177768CIL_00045L_0003ENSMUSG00000079108ENSMUST00000110708ENSMUST00000164243ENSMUSG00000094103ENSMUST00000177978
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00045L_0001ENSG00000100883ENST00000216774ENST00000555557ENST00000556994ENSG00000151327ENST00000280987ENST00000382406ENSG00000258704ENST00000554945ENST00000555015ENST00000556355ENST00000556705CIL_00045L_0002ENSMUSG00000073079ENSMUST00000021407ENSMUSG00000095595ENSMUST00000177768CIL_00045L_0003ENSMUSG00000079108ENSMUST00000110708ENSMUST00000164243ENSMUSG00000094103ENSMUST00000177978
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100883 ENST00000216774 4.793±0.00 N/A 3.076±0.00 6.613±0.86 3.654±0.09 4.907±0.64 2.434±0.45 9.055±2.83 3.874±0.57 3.987±2.29 1.985±0.75 15.164±5.04 9.441±4.00 17.437±6.12
ENST00000546080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555557 8.531±0.00 8.768±0.00 N/A 8.060±5.36 7.542±0.00 4.099±0.00 2.947±2.28 10.035±0.00 4.544±2.75 4.483±0.00 5.369±0.00 12.591±12.96 4.570±0.70 24.698±8.89
ENST00000555746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556994 N/A 3.218±0.00 N/A N/A N/A N/A 2.044±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000151327 ENST00000280987 14.151±0.00 13.952±0.00 3.928±0.00 13.781±4.65 9.462±1.32 10.183±3.25 7.738±5.28 18.146±0.00 8.729±2.41 20.039±0.00 N/A 12.525±2.18 10.243±0.00 N/A
ENST00000382406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 130.969±0.00 50.436±0.00 168.127±0.00
ENST00000396472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553901 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258704 ENST00000554945 N/A N/A N/A 0.099±0.00 0.434±0.20 0.702±0.00 0.181±0.07 0.860±0.00 0.387±0.10 1.241±0.00 1.674±0.00 0.509±0.25 0.149±0.00 1.144±0.27
ENST00000555015 N/A N/A N/A 0.147±0.00 0.540±0.00 N/A N/A N/A 0.197±0.00 N/A N/A 0.547±0.10 0.224±0.09 0.472±0.00
ENST00000556355 N/A N/A N/A N/A N/A 0.112±0.00 0.051±0.00 0.123±0.00 N/A N/A N/A N/A N/A 0.277±0.00
ENST00000556705 N/A N/A N/A 0.455±0.00 0.087±0.00 N/A 0.270±0.00 0.327±0.00 0.508±0.35 0.953±0.00 N/A 0.233±0.00 N/A 0.233±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000073079 ENSMUST00000021407 N/A N/A 34.609±0.00 12.400±12.24 N/A N/A N/A N/A 39.266±9.67 N/A N/A N/A N/A N/A
ENSMUSG00000095595 ENSMUST00000177768 4.963±0.62 1.688±0.17 12.208±3.40 5.482±3.62 4.306±0.99 3.629±0.51 2.780±0.23 2.919±0.36 1.548±0.79 10.346±1.93 2.487±0.26 2.114±1.16 2.331±0.59 7.479±3.50
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000079108 ENSMUST00000110708 11.551±3.58 51.744±9.10 17.544±11.26 11.205±9.43 12.057±8.17 13.543±9.07 9.170±1.68 6.694±2.65 12.402±8.85 11.824±7.30 4.609±0.60 19.082±13.17 4.034±3.04 8.101±4.16
ENSMUST00000164243 1.397±0.23 0.334±0.19 18.224±11.95 13.439±7.57 0.640±0.32 0.576±0.34 1.448±0.11 0.890±0.25 7.289±12.12 1.262±0.24 3.597±0.57 1.966±2.99 8.249±2.61 5.243±2.43
ENSMUSG00000094103 ENSMUST00000177978 1.033±0.70 1.684±2.08 2.621±0.21 3.788±0.13 3.890±3.23 12.168±3.81 0.538±0.48 0.914±0.37 0.753±0.55 12.795±4.72 0.146±0.05 5.261±3.45 1.747±0.01 17.328±8.07

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