C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 54B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164243 Srp54b-202 ENSMUSG00000079108 10090 + 12:55239326-55263020 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000164243
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000164243 1.397±0.23 0.334±0.19 18.224±11.95 13.439±7.57 0.640±0.32 0.576±0.34 1.448±0.11 0.890±0.25 7.289±12.12 1.262±0.24 3.597±0.57 1.966±2.99 8.249±2.61 5.243±2.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045L CIL_00045L_0003 CGP 12:55155104-55263020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005575 ND cellular_component
GO:0006184 IEA GTP catabolic process
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008150 ND biological_process
GO:0008312 IEA 7S RNA binding
GO:0048500 IEA signal recognition particle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000018678 srp54-201 protein_coding Danio_rerio 0 1144
ENSDART00000133424 srp54-001 protein_coding Danio_rerio 0 1144
ENST00000216774 SRP54-201 protein_coding Homo_sapiens 0 2185
ENST00000546080 SRP54-202 protein_coding Homo_sapiens 0 1921
ENST00000553544 SRP54-009 retained_intron Homo_sapiens 2e-32 143
ENST00000554803 SRP54-005 protein_coding Homo_sapiens 0 198
ENST00000555317 SRP54-008 retained_intron Homo_sapiens 0 268
ENST00000555535 SRP54-007 processed_transcript Homo_sapiens 0 399
ENST00000555557 SRP54-002 protein_coding Homo_sapiens 0 1857
ENST00000555746 SRP54-006 protein_coding Homo_sapiens 0 344
ENST00000556380 SRP54-010 nonsense_mediated_decay Homo_sapiens 0 496
ENST00000556992 SRP54-013 retained_intron Homo_sapiens 0 243
ENST00000556994 SRP54-001 protein_coding Homo_sapiens 0 2187

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