C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 54B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110708 Srp54b-201 ENSMUSG00000079108 10090 + 12:55155104-55189213 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110708
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110708 11.551±3.58 51.744±9.10 17.544±11.26 11.205±9.43 12.057±8.17 13.543±9.07 9.170±1.68 6.694±2.65 12.402±8.85 11.824±7.30 4.609±0.60 19.082±13.17 4.034±3.04 8.101±4.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045L CIL_00045L_0003 CGP 12:55155104-55263020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005786 IEA signal recognition particle, endoplasmic reticulum targeting
GO:0006184 IEA GTP catabolic process
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000018678 srp54-201 protein_coding Danio_rerio 0 1149
ENSDART00000133424 srp54-001 protein_coding Danio_rerio 0 1149
ENST00000216774 SRP54-201 protein_coding Homo_sapiens 0 2425
ENST00000546080 SRP54-202 protein_coding Homo_sapiens 0 1954
ENST00000553544 SRP54-009 retained_intron Homo_sapiens 0 333
ENST00000554803 SRP54-005 protein_coding Homo_sapiens 0 292
ENST00000555317 SRP54-008 retained_intron Homo_sapiens 0 436
ENST00000555535 SRP54-007 processed_transcript Homo_sapiens 0 422
ENST00000555557 SRP54-002 protein_coding Homo_sapiens 0 1890
ENST00000555746 SRP54-006 protein_coding Homo_sapiens 0 366
ENST00000556380 SRP54-010 nonsense_mediated_decay Homo_sapiens 0 501
ENST00000556992 SRP54-013 retained_intron Homo_sapiens 0 243
ENST00000556994 SRP54-001 protein_coding Homo_sapiens 0 2429

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