C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox D3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000079277 Hoxd3 10090 + 2:74711927-74748442 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047830 Hoxd3-005 74739619-74747900 protein_coding
  ENSMUST00000111982 Hoxd3-004 74736515-74747915 protein_coding
  ENSMUST00000111983 Hoxd3-001 74711927-74748271 protein_coding
  ENSMUST00000140666 Hoxd3-007 74745674-74746596 protein_coding
  ENSMUST00000144544 Hoxd3-006 74732913-74744214 protein_coding
  ENSMUST00000190553 Hoxd3-008 74745722-74748442 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLiverLungOvaryENSMUST00000047830ENSMUST00000111982ENSMUST00000111983ENSMUST00000190553
Transcript ID Adipose Adrenal Brain Colon Kidney Liver Lung Ovary
ENSMUST00000047830 N/A N/A 8.867±0.00 N/A N/A 0.037±0.03 0.079±0.00 N/A
ENSMUST00000111982 N/A N/A 2.899±1.54 N/A N/A N/A N/A N/A
ENSMUST00000111983 6.094±0.80 3.163±0.67 N/A 1.120±0.01 3.670±1.58 0.005±0.00 N/A 9.212±3.36
ENSMUST00000190553 N/A N/A 5.326±2.83 N/A N/A 0.007±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_00017M CIL_00017M_0002 CGP 2:74704615-74748442
CIL_0006SE CIL_0006SE_0002 CGP 2:74711927-74748442

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007160 IEA cell-matrix adhesion
GO:0007219 IEA Notch signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0010628 IEA positive regulation of gene expression
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059280 hoxd3a homeo box D3a protein_coding Danio_rerio
ENSG00000128652 HOXD3 homeobox D3 protein_coding Homo_sapiens

Loading