C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox D3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128652 HOXD3 9606 + 2:176136612-176173102 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000249440 HOXD3-001 176164077-176173102 protein_coding
  ENST00000410016 HOXD3-004 176160891-176173085 protein_coding
  ENST00000432796 HOXD3-002 176136957-176169415 protein_coding
  ENST00000459979 HOXD3-003 176136612-176139663 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENST00000249440ENST00000410016ENST00000432796ENST00000459979
Transcript ID Adipose Bladder Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000249440 0.691±0.00 N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A 0.056±0.00 2.861±0.00
ENST00000410016 N/A 1.032±0.00 0.024±0.00 N/A N/A N/A N/A N/A N/A 0.132±0.00 N/A
ENST00000432796 N/A N/A N/A 2.177±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000459979 1.590±0.00 N/A N/A N/A 2.144±0.00 0.464±0.00 0.295±0.00 0.423±0.24 0.837±0.00 0.288±0.11 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_00090A CIL_00090A_0001 VISTA 2:175589301-176190657
CIL_0008JZ CIL_0008JZ_0001 VISTA 2:175775342-176376682
CIL_00017M CIL_00017M_0001 CGP 2:176129694-176173102

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0006351 IMP transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007160 IDA cell-matrix adhesion
GO:0007219 IMP Notch signaling pathway
GO:0009952 ISS anterior/posterior pattern specification
GO:0010628 IMP positive regulation of gene expression
GO:0030878 ISS thyroid gland development
GO:0043565 IEA sequence-specific DNA binding
GO:0045666 ISS positive regulation of neuron differentiation
GO:0048704 ISS embryonic skeletal system morphogenesis
GO:0051216 ISS cartilage development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059280 hoxd3a homeo box D3a protein_coding Danio_rerio
ENSMUSG00000079277 Hoxd3 homeobox D3 protein_coding Mus_musculus

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