C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047830 Hoxd3-005 ENSMUSG00000079277 10090 + 2:74739619-74747900 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverLungENSMUST00000047830
Transcript ID Brain Liver Lung
ENSMUST00000047830 8.867±0.00 0.037±0.03 0.079±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_00017M CIL_00017M_0002 CGP 2:74704615-74748442
CIL_0006SE CIL_0006SE_0002 CGP 2:74711927-74748442

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222726 HOXA5-001 protein_coding Homo_sapiens 0.0000006 60
ENST00000222728 HOXA6-001 protein_coding Homo_sapiens 3e-33 147
ENST00000239151 HOXB5-001 protein_coding Homo_sapiens 8e-27 126
ENST00000242159 HOXA7-001 protein_coding Homo_sapiens 5e-29 134
ENST00000249440 HOXD3-001 protein_coding Homo_sapiens 0 2486
ENST00000306324 HOXD4-001 protein_coding Homo_sapiens 0.000002 58
ENST00000311626 HOXB3-007 protein_coding Homo_sapiens 0 268
ENST00000332503 HOXB4-001 protein_coding Homo_sapiens 3e-23 115
ENST00000360046 HOXA4-001 protein_coding Homo_sapiens 5e-18 97
ENST00000410016 HOXD3-004 protein_coding Homo_sapiens 0 2453
ENST00000428284 HOXA4-201 protein_coding Homo_sapiens 5e-18 97
ENST00000432796 HOXD3-002 protein_coding Homo_sapiens 0 453
ENST00000460160 HOXB3-006 protein_coding Homo_sapiens 0 268
ENST00000468418 HOXD3-001 nonsense_mediated_decay Homo_sapiens 0 2453
ENST00000470495 HOXB3-001 protein_coding Homo_sapiens 0 268
ENST00000472863 HOXB3-003 protein_coding Homo_sapiens 0 268
ENST00000476342 HOXB3-004 protein_coding Homo_sapiens 0 268
ENST00000489475 HOXB3-005 protein_coding Homo_sapiens 0 268
ENST00000490677 HOXB3-008 protein_coding Homo_sapiens 0 268
ENST00000498678 HOXB3-002 protein_coding Homo_sapiens 0 268
ENST00000511914 HOXA4-004 protein_coding Homo_sapiens 3e-18 97
ENST00000520854 HOXA5-002 processed_transcript Homo_sapiens 0.0000001 60
ENST00000521478 HOXA6-002 processed_transcript Homo_sapiens 2e-33 147
ENST00000523796 HOXA7-003 processed_transcript Homo_sapiens 1e-29 134
ENST00000610970 HOXA4-202 protein_coding Homo_sapiens 5e-18 97

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