C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006SE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000059280-ENSDARG00000059280 CGP 7955 9:1927848-1950351
GeneTranscriptPositionBiotype
ENSDARG00000059276 (hoxd4a)
homeo box D4a 		ENSDART00000082355 (hoxd4a-001) 1939264-1941943 protein_coding
ENSDARG00000059280 (hoxd3a)
homeo box D3a 		ENSDART00000082359 (hoxd3a-201) 1928485-1929889 protein_coding
ENSDART00000138730 (hoxd3a-002) 1929784-1950351 processed_transcript
ENSDART00000146131 (hoxd3a-001) 1927848-1930031 protein_coding
ENSDARG00000094186 (si:rp71-78h1.11)
si:rp71-78h1.11 		ENSDART00000140438 (si:rp71-78h1.11-001) 1943820-1946722 processed_transcript
CIL_0006SE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000079277-ENSMUSG00000079277 CGP 10090 2:74711927-74748442
GeneTranscriptPositionBiotype
ENSMUSG00000052371 (Hoxd3os1)
homeobox D3, opposite strand 1 		ENSMUST00000132326 (Hoxd3os1-004) 74703248-74712054 antisense
ENSMUST00000139005 (Hoxd3os1-002) 74713126-74716130 antisense
ENSMUST00000145799 (Hoxd3os1-001) 74710193-74715996 antisense
ENSMUST00000156342 (Hoxd3os1-003) 74710043-74712526 antisense
ENSMUSG00000065500 (Mir10b)
microRNA 10b 		ENSMUST00000083566 (Mir10b-201) 74726064-74726143 miRNA
ENSMUSG00000079277 (Hoxd3)
homeobox D3 		ENSMUST00000047830 (Hoxd3-005) 74739619-74747900 protein_coding
ENSMUST00000111982 (Hoxd3-004) 74736515-74747915 protein_coding
ENSMUST00000111983 (Hoxd3-001) 74711927-74748271 protein_coding
ENSMUST00000140666 (Hoxd3-007) 74745674-74746596 protein_coding
ENSMUST00000144544 (Hoxd3-006) 74732913-74744214 protein_coding
ENSMUST00000190553 (Hoxd3-008) 74745722-74748442 retained_intron
ENSMUSG00000100642 (HOXD3)
predicted gene 28230 		ENSMUST00000053932 (HOXD3-001) 74726728-74747918 nonsense_mediated_decay
ENSMUSG00000101174 (Hoxd4)
homeobox D4 		ENSMUST00000047904 (Hoxd4-201) 74721978-74729160 protein_coding
ENSMUST00000111980 (Hoxd4-001) 74727074-74729123 protein_coding
ENSMUST00000144040 (Hoxd4-002) 74711929-74728868 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006SE_0001ENSDARG00000059276ENSDART00000082355ENSDARG00000059280ENSDART00000082359ENSDART00000138730ENSDART00000146131ENSDARG00000094186ENSDART00000140438CIL_0006SE_0002ENSMUSG00000052371ENSMUST00000132326ENSMUST00000139005ENSMUST00000145799ENSMUST00000156342ENSMUSG00000065500ENSMUST00000083566ENSMUSG00000079277ENSMUST00000047830ENSMUST00000111982ENSMUST00000111983ENSMUST00000140666ENSMUST00000144544ENSMUST00000190553ENSMUSG00000100642ENSMUST00000053932ENSMUSG00000101174ENSMUST00000047904ENSMUST00000111980ENSMUST00000144040
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006SE_0001ENSDARG00000059276ENSDART00000082355ENSDARG00000059280ENSDART00000082359ENSDART00000138730ENSDART00000146131ENSDARG00000094186ENSDART00000140438CIL_0006SE_0002ENSMUSG00000052371ENSMUST00000132326ENSMUST00000139005ENSMUST00000145799ENSMUST00000156342ENSMUSG00000065500ENSMUST00000083566ENSMUSG00000079277ENSMUST00000047830ENSMUST00000111982ENSMUST00000111983ENSMUST00000190553ENSMUSG00000100642ENSMUST00000053932ENSMUSG00000101174ENSMUST00000047904ENSMUST00000111980ENSMUST00000144040
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000059276 ENSDART00000082355 N/A N/A N/A 0.623±0.29 N/A N/A 0.029±0.00 0.261±0.09 N/A N/A 0.115±0.00 N/A N/A N/A
ENSDARG00000059280 ENSDART00000082359 N/A N/A N/A N/A N/A N/A 0.106±0.00 0.190±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000138730 N/A N/A N/A 0.802±0.09 N/A N/A 0.259±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146131 N/A N/A N/A 0.731±0.00 N/A N/A N/A N/A N/A N/A 0.451±0.00 N/A N/A N/A
ENSDARG00000094186 ENSDART00000140438 N/A N/A N/A 0.134±0.03 N/A N/A N/A N/A N/A N/A 0.163±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000052371 ENSMUST00000132326 N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.04 N/A 3.162±1.20 N/A N/A N/A
ENSMUST00000139005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.933±14.70
ENSMUST00000145799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.780±4.06
ENSMUST00000156342 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.266±0.00 1.705±0.33 N/A N/A N/A
ENSMUSG00000065500 ENSMUST00000083566 N/A N/A N/A N/A N/A N/A N/A 15348.100±0.00 N/A N/A N/A N/A N/A N/A
ENSMUSG00000079277 ENSMUST00000047830 N/A N/A N/A 8.867±0.00 N/A N/A N/A N/A 0.037±0.03 0.079±0.00 N/A N/A N/A N/A
ENSMUST00000111982 N/A N/A N/A 2.899±1.54 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000111983 6.094±0.80 3.163±0.67 N/A N/A N/A 1.120±0.01 N/A 3.670±1.58 0.005±0.00 N/A N/A 9.212±3.36 N/A N/A
ENSMUST00000140666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190553 N/A N/A N/A 5.326±2.83 N/A N/A N/A N/A 0.007±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000100642 ENSMUST00000053932 4.022±1.86 3.482±0.26 6.860±0.33 N/A 1.570±0.48 1.064±0.33 0.078±0.02 4.344±0.88 0.013±0.01 0.095±0.02 0.212±0.06 5.706±1.66 0.612±0.17 N/A
ENSMUSG00000101174 ENSMUST00000047904 N/A N/A N/A N/A 0.943±0.00 N/A 0.060±0.00 N/A 0.011±0.00 N/A 0.336±0.06 N/A 0.550±0.00 N/A
ENSMUST00000111980 14.007±4.52 27.462±9.08 16.854±0.00 N/A 3.281±1.22 5.002±1.12 0.159±0.06 8.861±3.41 0.063±0.04 0.222±0.12 0.536±0.19 25.282±8.47 0.857±0.13 N/A
ENSMUST00000144040 10.549±2.31 16.777±6.87 N/A N/A 3.483±0.68 2.956±0.34 N/A 7.880±1.73 0.022±0.00 0.341±0.00 0.561±0.05 9.059±0.00 N/A N/A

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