C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: autophagy related 4A, cysteine peptidase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000079418 Atg4a 10090 + X:140956907-141164270 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000112971 Atg4a-001 140956907-141164270 protein_coding
  ENSMUST00000147972 Atg4a-003 141162095-141163455 retained_intron
  ENSMUST00000153742 Atg4a-002 140956950-140992837 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112971ENSMUST00000147972
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112971 1.526±0.59 0.800±0.24 5.220±1.03 1.053±0.42 1.139±0.39 1.339±0.54 1.905±0.66 2.634±0.67 4.656±3.49 1.269±0.26 11.163±0.57 1.549±1.85 8.135±3.59 1.061±0.53
ENSMUST00000147972 1.554±0.54 0.672±0.29 N/A 2.687±0.00 0.763±0.02 0.625±0.28 N/A N/A 0.740±0.00 1.924±0.63 N/A 1.093±0.18 2.313±0.00 0.918±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JI CIL_0006JI_0002 CGP X:140948429-141164270
CIL_0006JL CIL_0006JL_0002 CGP X:140956907-141474076

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0005737 ISS cytoplasm
GO:0006508 IEA proteolysis
GO:0006914 ISS autophagy
GO:0008234 IEA cysteine-type peptidase activity
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014531 atg4a ATG4 autophagy related 4 homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSG00000101844 ATG4A autophagy related 4A, cysteine peptidase protein_coding Homo_sapiens

Loading