C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 4A, cysteine peptidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147972 Atg4a-003 ENSMUSG00000079418 10090 + X:141162095-141163455 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000147972
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000147972 1.554±0.54 0.672±0.29 2.687±0.00 0.763±0.02 0.625±0.28 0.740±0.00 1.924±0.63 1.093±0.18 2.313±0.00 0.918±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JI CIL_0006JI_0002 CGP X:140948429-141164270
CIL_0006JL CIL_0006JL_0002 CGP X:140956907-141474076

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343524 ATG4A-004 nonsense_mediated_decay Homo_sapiens 0 300
ENST00000345734 ATG4A-002 protein_coding Homo_sapiens 0 300
ENST00000372232 ATG4A-001 protein_coding Homo_sapiens 0 300
ENST00000372246 ATG4A-003 nonsense_mediated_decay Homo_sapiens 0 300
ENST00000416893 ATG4AP1-001 processed_pseudogene Homo_sapiens 3e-31 139
ENST00000489247 ATG4A-008 processed_transcript Homo_sapiens 0 300

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