C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 4A, cysteine peptidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112971 Atg4a-001 ENSMUSG00000079418 10090 + X:140956907-141164270 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112971
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112971 1.526±0.59 0.800±0.24 5.220±1.03 1.053±0.42 1.139±0.39 1.339±0.54 1.905±0.66 2.634±0.67 4.656±3.49 1.269±0.26 11.163±0.57 1.549±1.85 8.135±3.59 1.061±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JI CIL_0006JI_0002 CGP X:140948429-141164270
CIL_0006JL CIL_0006JL_0002 CGP X:140956907-141474076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0005737 ISS cytoplasm
GO:0006508 IEA proteolysis
GO:0006914 ISS autophagy
GO:0008234 IEA cysteine-type peptidase activity
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343524 ATG4A-004 nonsense_mediated_decay Homo_sapiens 0 708
ENST00000345734 ATG4A-002 protein_coding Homo_sapiens 0 869
ENST00000372232 ATG4A-001 protein_coding Homo_sapiens 0 1810
ENST00000372246 ATG4A-003 nonsense_mediated_decay Homo_sapiens 0 1600
ENST00000394892 ATG4A-005 protein_coding Homo_sapiens 0 1005
ENST00000416893 ATG4AP1-001 processed_pseudogene Homo_sapiens 3e-31 139
ENST00000457035 ATG4A-006 protein_coding Homo_sapiens 0 1024
ENST00000489247 ATG4A-008 processed_transcript Homo_sapiens 0 531

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