C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: autophagy related 4A, cysteine peptidase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101844 ATG4A 9606 + X:108091668-108154671 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343524 ATG4A-004 108091810-108154671 nonsense_mediated_decay
  ENST00000345734 ATG4A-002 108091668-108154671 protein_coding
  ENST00000372232 ATG4A-001 108091668-108154671 protein_coding
  ENST00000372246 ATG4A-003 108091784-108154671 nonsense_mediated_decay
  ENST00000394892 ATG4A-005 108126077-108151858 protein_coding
  ENST00000457035 ATG4A-006 108091769-108150175 protein_coding
  ENST00000474825 ATG4A-007 108150032-108153010 processed_transcript
  ENST00000489247 ATG4A-008 108150068-108153868 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343524ENST00000345734ENST00000372232ENST00000372246ENST00000394892
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343524 N/A 1.532±0.00 N/A N/A 0.664±0.00 1.233±0.00 N/A N/A 1.495±0.00 0.626±0.00 N/A 0.465±0.00 1.493±0.00
ENST00000345734 1.576±0.00 N/A 0.843±0.00 N/A N/A N/A N/A N/A 0.704±0.00 N/A 0.616±0.00 N/A N/A
ENST00000372232 1.076±0.00 N/A 0.334±0.00 2.739±0.84 1.680±0.69 1.724±1.00 3.670±2.96 4.440±0.00 3.159±0.00 1.355±0.00 1.485±0.82 2.341±0.38 0.732±0.07
ENST00000372246 0.576±0.00 0.606±0.00 0.417±0.20 N/A 0.262±0.00 0.595±0.04 N/A 1.068±0.00 0.850±0.53 0.508±0.20 0.414±0.00 0.624±0.14 2.175±0.05
ENST00000394892 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.825±0.00 N/A 2.169±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JI CIL_0006JI_0001 CGP X:108084207-108154671
CIL_0006JL CIL_0006JL_0001 CGP X:108091668-108439497

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0006508 IEA proteolysis
GO:0006914 IEA autophagy
GO:0008234 IEA cysteine-type peptidase activity
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014531 atg4a ATG4 autophagy related 4 homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000079418 Atg4a autophagy related 4A, cysteine peptidase protein_coding Mus_musculus

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