C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription elongation factor B (SIII), polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188641 Tceb1-002 ENSMUSG00000079658 10090 - 1:16641725-16656884 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000188641
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000188641 2.548±0.86 2.898±0.83 16.562±2.75 17.863±7.95 2.436±1.17 2.547±0.83 3.495±1.27 4.649±1.30 5.335±2.57 4.430±0.40 19.629±3.68 3.809±2.45 4.091±2.40 10.234±1.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C4 CIL_0005C4_0003 CGP 1:16540790-16657042
CIL_00008W CIL_00008W_0003 CGP 1:16641725-16678275

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0030891 IEA VCB complex
GO:0032403 IEA protein complex binding
GO:0032968 IEA positive regulation of transcription elongation from RNA polymerase II promoter
GO:0070449 IDA elongin complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000284811 TCEB1-007 protein_coding Homo_sapiens 0 750
ENST00000434209 TCEB1P18-001 processed_pseudogene Homo_sapiens 0 399
ENST00000439303 TCEB1P3-001 processed_pseudogene Homo_sapiens 0 405
ENST00000518127 TCEB1-004 protein_coding Homo_sapiens 0 968
ENST00000519082 TCEB1-009 protein_coding Homo_sapiens 0 399
ENST00000519487 TCEB1-006 protein_coding Homo_sapiens 0 776
ENST00000520210 TCEB1-003 protein_coding Homo_sapiens 0 929
ENST00000520242 TCEB1-001 protein_coding Homo_sapiens 0 1029
ENST00000522337 TCEB1-010 protein_coding Homo_sapiens 0 686
ENST00000523815 TCEB1-008 protein_coding Homo_sapiens 0 671
ENST00000529735 TCEB1P22-001 processed_pseudogene Homo_sapiens 0 361
ENST00000540463 TCEB1P31-001 processed_pseudogene Homo_sapiens 0 507
ENST00000566760 TCEB1P2-001 unprocessed_pseudogene Homo_sapiens 0 433
ENST00000602840 TCEB1-005 protein_coding Homo_sapiens 0 237
ENST00000603716 TCEB1P33-001 processed_pseudogene Homo_sapiens 8e-27 124
ENST00000622804 TCEB1-201 protein_coding Homo_sapiens 0 968

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