C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription elongation factor B (SIII), polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115352 Tceb1-001 ENSMUSG00000079658 10090 - 1:16642767-16657042 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyLiverMuscleOvaryPlacentaENSMUST00000115352
Transcript ID Bladder Brain Colon Kidney Liver Muscle Ovary Placenta
ENSMUST00000115352 12.273±0.92 9.015±0.00 2.511±0.00 5.210±0.00 11.762±8.74 7.805±0.95 7.507±0.86 15.512±6.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C4 CIL_0005C4_0003 CGP 1:16540790-16657042
CIL_00008W CIL_00008W_0003 CGP 1:16641725-16678275

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0070449 IDA elongin complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000284811 TCEB1-007 protein_coding Homo_sapiens 0 752
ENST00000434209 TCEB1P18-001 processed_pseudogene Homo_sapiens 0 399
ENST00000439303 TCEB1P3-001 processed_pseudogene Homo_sapiens 0 405
ENST00000518127 TCEB1-004 protein_coding Homo_sapiens 0 928
ENST00000519082 TCEB1-009 protein_coding Homo_sapiens 0 401
ENST00000519487 TCEB1-006 protein_coding Homo_sapiens 0 778
ENST00000520210 TCEB1-003 protein_coding Homo_sapiens 0 872
ENST00000520242 TCEB1-001 protein_coding Homo_sapiens 0 911
ENST00000522337 TCEB1-010 protein_coding Homo_sapiens 0 689
ENST00000523815 TCEB1-008 protein_coding Homo_sapiens 0 673
ENST00000529735 TCEB1P22-001 processed_pseudogene Homo_sapiens 0 361
ENST00000540463 TCEB1P31-001 processed_pseudogene Homo_sapiens 0 510
ENST00000566760 TCEB1P2-001 unprocessed_pseudogene Homo_sapiens 0 433
ENST00000602840 TCEB1-005 protein_coding Homo_sapiens 0 239
ENST00000603716 TCEB1P33-001 processed_pseudogene Homo_sapiens 8e-27 124
ENST00000622804 TCEB1-201 protein_coding Homo_sapiens 0 913

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