C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S6 kinase polypeptide 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000089872 Rps6kc1 10090 - 1:190700202-190911770 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000061611 Rps6kc1-001 190772879-190911770 protein_coding
  ENSMUST00000159066 Rps6kc1-007 190885376-190911769 protein_coding
  ENSMUST00000159367 Rps6kc1-006 190772879-190911738 nonsense_mediated_decay
  ENSMUST00000159624 Rps6kc1-004 190700202-190911747 nonsense_mediated_decay
  ENSMUST00000159823 Rps6kc1-003 190796069-190844584 retained_intron
  ENSMUST00000160889 Rps6kc1-005 190772879-190834036 nonsense_mediated_decay
  ENSMUST00000160891 Rps6kc1-009 190808888-190810463 retained_intron
  ENSMUST00000162500 Rps6kc1-002 190798448-190911734 retained_intron
  ENSMUST00000162692 Rps6kc1-008 190871930-190899717 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061611ENSMUST00000159066ENSMUST00000159367ENSMUST00000159823ENSMUST00000160889ENSMUST00000162500
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061611 3.498±0.50 1.570±0.20 3.362±0.99 8.742±3.67 1.466±0.60 2.326±0.42 1.567±0.15 1.553±0.56 1.032±0.38 3.076±0.54 2.886±0.78 2.809±1.34 3.970±1.17 0.801±0.27
ENSMUST00000159066 N/A 11.751±2.57 N/A N/A N/A 4.449±0.00 N/A N/A 2.434±0.40 N/A N/A 5.970±0.97 N/A N/A
ENSMUST00000159367 N/A N/A N/A N/A N/A N/A N/A N/A 1.205±0.00 N/A N/A N/A N/A N/A
ENSMUST00000159823 0.665±0.00 N/A N/A 0.938±0.00 0.219±0.00 N/A 0.262±0.00 N/A 0.232±0.03 N/A N/A 0.451±0.06 0.332±0.00 0.254±0.00
ENSMUST00000160889 N/A N/A 1.561±0.67 N/A 0.898±0.00 N/A N/A 0.882±0.23 0.378±0.01 N/A 1.284±0.25 2.539±1.19 1.805±0.00 0.562±0.00
ENSMUST00000162500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.382±0.70 2.123±0.79 0.386±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007J3 CIL_0007J3_0002 UCNEbase 1:189990273-190853986
CIL_0009A8 CIL_0009A8_0002 VISTA 1:190353740-190955122
CIL_00092Y CIL_00092Y_0002 VISTA 1:190427303-191030173

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004672 IEA protein kinase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005769 IEA early endosome
GO:0006468 IEA protein phosphorylation
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0035091 IEA phosphatidylinositol binding
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000136643 RPS6KC1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 protein_coding Homo_sapiens

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