C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S6 kinase polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160889 Rps6kc1-005 ENSMUSG00000089872 10090 - 1:190772879-190834036 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000160889
Transcript ID Bladder Breast Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000160889 1.561±0.67 0.898±0.00 0.882±0.23 0.378±0.01 1.284±0.25 2.539±1.19 1.805±0.00 0.562±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007J3 CIL_0007J3_0002 UCNEbase 1:189990273-190853986
CIL_0009A8 CIL_0009A8_0002 VISTA 1:190353740-190955122
CIL_00092Y CIL_00092Y_0002 VISTA 1:190427303-191030173

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000366959 RPS6KC1-002 protein_coding Homo_sapiens 0 1146
ENST00000366960 RPS6KC1-001 protein_coding Homo_sapiens 0 1146
ENST00000490299 RPS6KC1-003 processed_transcript Homo_sapiens 0 1146
ENST00000491616 RPS6KC1-005 processed_transcript Homo_sapiens 0 401
ENST00000543354 RPS6KC1-201 protein_coding Homo_sapiens 0 1146
ENST00000543470 RPS6KC1-202 protein_coding Homo_sapiens 0 1146
ENST00000614059 RPS6KC1-203 protein_coding Homo_sapiens 0 1146
ENST00000615329 RPS6KC1-204 protein_coding Homo_sapiens 0 1192

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