C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007J3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
PROX1 UCNEbase 9606 1:213159436-214186583
GeneTranscriptPositionBiotype
ENSG00000136643 (RPS6KC1)
ribosomal protein S6 kinase, 52kDa, polypeptide 1 		ENST00000366959 (RPS6KC1-002) 213051255-213274773 protein_coding
ENST00000366960 (RPS6KC1-001) 213051255-213274773 protein_coding
ENST00000468069 (RPS6KC1-004) 213129527-213176704 processed_transcript
ENST00000490299 (RPS6KC1-003) 213072938-213274773 processed_transcript
ENST00000491616 (RPS6KC1-005) 213242060-213262816 processed_transcript
ENST00000543354 (RPS6KC1-201) 213051233-213273464 protein_coding
ENST00000543470 (RPS6KC1-202) 213051233-213273464 protein_coding
ENST00000614059 (RPS6KC1-203) 213051233-213273464 protein_coding
ENST00000615329 (RPS6KC1-204) 213051233-213273464 protein_coding
ENSG00000225233 (RP11-554K11.2)
 ENST00000417161 (RP11-554K11.2-001) 213492301-213546447 lincRNA
ENSG00000228255 (RP11-323I1.1)
 ENST00000456240 (RP11-323I1.1-001) 213731416-213794587 lincRNA
ENSG00000272167 (PROX1-AS1)
 ENST00000607258 (PROX1-AS1-001) 214028891-214030901 antisense
ENSG00000274895 (RP11-478J18.2)
 ENST00000610409 (RP11-478J18.2-001) 213983793-213986419 antisense
CIL_0007J3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
PROX1 UCNEbase 10090 1:189990273-190853986
GeneTranscriptPositionBiotype
ENSMUSG00000010175 (Prox1)
prospero homeobox 1 		ENSMUST00000010319 (Prox1-003) 190122453-190169399 protein_coding
ENSMUST00000175916 (Prox1-001) 190118035-190170714 protein_coding
ENSMUST00000177288 (Prox1-002) 190121775-190170233 protein_coding
ENSMUSG00000079045 (Prox1os)
prospero homeobox 1, opposite strand 		ENSMUST00000110279 (Prox1os-001) 190170296-190217276 antisense
ENSMUSG00000089872 (Rps6kc1)
ribosomal protein S6 kinase polypeptide 1 		ENSMUST00000061611 (Rps6kc1-001) 190772879-190911770 protein_coding
ENSMUST00000159066 (Rps6kc1-007) 190885376-190911769 protein_coding
ENSMUST00000159367 (Rps6kc1-006) 190772879-190911738 nonsense_mediated_decay
ENSMUST00000159624 (Rps6kc1-004) 190700202-190911747 nonsense_mediated_decay
ENSMUST00000159823 (Rps6kc1-003) 190796069-190844584 retained_intron
ENSMUST00000160889 (Rps6kc1-005) 190772879-190834036 nonsense_mediated_decay
ENSMUST00000160891 (Rps6kc1-009) 190808888-190810463 retained_intron
ENSMUST00000162500 (Rps6kc1-002) 190798448-190911734 retained_intron
ENSMUST00000162692 (Rps6kc1-008) 190871930-190899717 processed_transcript
ENSMUSG00000093064 (Gm23153)
predicted gene, 23153 		ENSMUST00000175323 (Gm23153-201) 190482845-190483157 misc_RNA
ENSMUSG00000099404 (RP23-190F21.1)
predicted gene 28172 		ENSMUST00000189880 (RP23-190F21.1-001) 190168670-190169633 antisense
ENSMUSG00000101293 (RP23-190F21.2)
 ENSMUST00000186611 (RP23-190F21.2-001) 190163690-190164612 sense_intronic
CIL_0007J3_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
PROX1 UCNEbase 7955 17:33018650-33348984
GeneTranscriptPositionBiotype
ENSDARG00000055158 (prox1a)
prospero-related homeobox gene 1a 		ENSDART00000077476 (prox1a-001) 33028346-33071546 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007J3_0001ENSG00000136643ENST00000366959ENST00000366960ENST00000468069ENST00000490299ENST00000491616ENST00000543354ENST00000543470ENST00000614059ENST00000615329ENSG00000225233ENST00000417161ENSG00000228255ENST00000456240ENSG00000272167ENST00000607258ENSG00000274895ENST00000610409CIL_0007J3_0002ENSMUSG00000010175ENSMUST00000010319ENSMUST00000175916ENSMUST00000177288ENSMUSG00000079045ENSMUST00000110279ENSMUSG00000089872ENSMUST00000061611ENSMUST00000159066ENSMUST00000159367ENSMUST00000159624ENSMUST00000159823ENSMUST00000160889ENSMUST00000160891ENSMUST00000162500ENSMUST00000162692ENSMUSG00000093064ENSMUST00000175323ENSMUSG00000099404ENSMUST00000189880ENSMUSG00000101293ENSMUST00000186611CIL_0007J3_0003ENSDARG00000055158ENSDART00000077476
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007J3_0001ENSG00000136643ENST00000366959ENST00000366960ENST00000468069ENST00000490299ENST00000491616ENST00000543354ENST00000543470ENST00000614059ENST00000615329ENSG00000225233ENST00000417161ENSG00000228255ENST00000456240ENSG00000272167ENST00000607258ENSG00000274895ENST00000610409CIL_0007J3_0002ENSMUSG00000010175ENSMUST00000010319ENSMUST00000175916ENSMUST00000177288ENSMUSG00000079045ENSMUST00000110279ENSMUSG00000089872ENSMUST00000061611ENSMUST00000159066ENSMUST00000159367ENSMUST00000159823ENSMUST00000160889ENSMUST00000162500ENSMUSG00000093064ENSMUST00000175323ENSMUSG00000099404ENSMUST00000189880ENSMUSG00000101293ENSMUST00000186611CIL_0007J3_0003ENSDARG00000055158ENSDART00000077476
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136643 ENST00000366959 N/A N/A N/A N/A N/A N/A N/A 0.613±0.00 N/A N/A 0.235±0.00 N/A N/A N/A
ENST00000366960 0.673±0.00 N/A 0.204±0.00 N/A 0.365±0.00 0.990±0.00 N/A N/A 0.173±0.00 1.014±0.00 0.162±0.00 1.344±0.42 0.534±0.17 1.437±0.07
ENST00000468069 N/A N/A 1.893±0.00 N/A N/A N/A N/A N/A N/A 2.852±0.00 N/A N/A N/A N/A
ENST00000490299 N/A N/A N/A 0.992±0.10 N/A N/A 0.208±0.00 N/A N/A 0.539±0.00 N/A 1.302±0.00 N/A N/A
ENST00000491616 N/A N/A 2.191±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543354 1.589±0.00 2.162±0.00 0.404±0.00 3.262±2.22 2.346±0.26 1.704±0.00 1.118±0.00 2.261±0.00 0.995±0.34 1.444±0.00 0.821±0.00 1.874±0.40 1.359±0.16 4.651±0.00
ENST00000543470 N/A N/A N/A 1.061±0.00 N/A N/A 0.667±0.18 N/A N/A N/A N/A N/A N/A 2.114±0.00
ENST00000614059 N/A N/A N/A 2.169±0.00 N/A N/A N/A 0.821±0.00 2.119±0.00 1.458±0.00 N/A 1.232±0.42 1.568±0.00 2.873±0.00
ENST00000615329 1.352±0.00 0.736±0.00 N/A 2.398±0.00 0.705±0.00 1.547±0.00 0.837±0.00 0.839±0.00 0.598±0.00 N/A 0.801±0.39 1.108±0.33 1.040±0.54 3.072±0.00
ENSG00000225233 ENST00000417161 N/A N/A N/A 0.148±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.102±0.02
ENSG00000228255 ENST00000456240 N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A 0.100±0.00
ENSG00000272167 ENST00000607258 N/A 0.242±0.00 0.057±0.00 0.087±0.03 0.328±0.00 0.063±0.00 0.026±0.01 0.537±0.00 0.107±0.08 N/A 0.149±0.00 0.319±0.29 N/A 0.011±0.00
ENSG00000274895 ENST00000610409 0.028±0.00 0.274±0.00 0.049±0.00 N/A 0.307±0.00 N/A N/A 0.925±0.00 0.456±0.00 N/A 0.052±0.00 0.395±0.35 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000010175 ENSMUST00000010319 N/A N/A N/A 1.983±0.00 0.237±0.00 0.207±0.00 1.424±0.00 0.632±0.22 N/A N/A N/A 0.369±0.00 0.086±0.00 2.108±0.68
ENSMUST00000175916 0.577±0.49 11.261±0.81 0.321±0.02 3.310±2.20 1.194±0.40 0.756±0.12 3.641±1.52 1.328±0.30 7.593±4.25 0.567±0.08 0.451±0.07 1.170±0.64 0.144±0.10 0.394±0.00
ENSMUST00000177288 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A
ENSMUSG00000079045 ENSMUST00000110279 N/A N/A N/A N/A N/A N/A N/A N/A 18.729±1.40 N/A N/A N/A N/A 2.419±0.00
ENSMUSG00000089872 ENSMUST00000061611 3.498±0.50 1.570±0.20 3.362±0.99 8.742±3.67 1.466±0.60 2.326±0.42 1.567±0.15 1.553±0.56 1.032±0.38 3.076±0.54 2.886±0.78 2.809±1.34 3.970±1.17 0.801±0.27
ENSMUST00000159066 N/A 11.751±2.57 N/A N/A N/A 4.449±0.00 N/A N/A 2.434±0.40 N/A N/A 5.970±0.97 N/A N/A
ENSMUST00000159367 N/A N/A N/A N/A N/A N/A N/A N/A 1.205±0.00 N/A N/A N/A N/A N/A
ENSMUST00000159624 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159823 0.665±0.00 N/A N/A 0.938±0.00 0.219±0.00 N/A 0.262±0.00 N/A 0.232±0.03 N/A N/A 0.451±0.06 0.332±0.00 0.254±0.00
ENSMUST00000160889 N/A N/A 1.561±0.67 N/A 0.898±0.00 N/A N/A 0.882±0.23 0.378±0.01 N/A 1.284±0.25 2.539±1.19 1.805±0.00 0.562±0.00
ENSMUST00000160891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.382±0.70 2.123±0.79 0.386±0.00
ENSMUST00000162692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000093064 ENSMUST00000175323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.199±0.00
ENSMUSG00000099404 ENSMUST00000189880 N/A 1.017±0.32 N/A 0.129±0.03 0.098±0.01 0.192±0.00 0.277±0.11 0.230±0.08 0.474±0.31 N/A N/A 0.280±0.01 N/A N/A
ENSMUSG00000101293 ENSMUST00000186611 N/A N/A N/A N/A N/A N/A N/A N/A 0.166±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000055158 ENSDART00000077476 N/A N/A N/A 4.292±1.08 N/A N/A 31.310±22.80 16.562±1.49 4.848±0.00 N/A 1.035±0.00 N/A N/A N/A

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