C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00000U_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000104517-ENSG00000155087 CGP 9606 8:102253012-102561017
GeneTranscriptPositionBiotype
ENSG00000104517 (UBR5)
ubiquitin protein ligase E3 component n-recognin 5 		ENST00000220959 (UBR5-002) 102253736-102412689 protein_coding
ENST00000517465 (UBR5-012) 102253946-102261986 retained_intron
ENST00000518145 (UBR5-007) 102345896-102347000 retained_intron
ENST00000518205 (UBR5-004) 102254198-102272931 protein_coding
ENST00000519365 (UBR5-008) 102298867-102305257 protein_coding
ENST00000519528 (UBR5-014) 102287505-102293709 processed_transcript
ENST00000520539 (UBR5-001) 102253012-102412841 protein_coding
ENST00000520898 (UBR5-009) 102298860-102305182 protein_coding
ENST00000521312 (UBR5-011) 102265208-102267435 retained_intron
ENST00000521566 (UBR5-013) 102271194-102276820 protein_coding
ENST00000521767 (UBR5-010) 102265203-102268718 retained_intron
ENST00000521922 (UBR5-003) 102254198-102412759 protein_coding
ENST00000522327 (UBR5-006) 102359652-102361209 retained_intron
ENSG00000155087 (ODF1)
outer dense fiber of sperm tails 1 		ENST00000285402 (ODF1-001) 102551572-102560988 protein_coding
ENST00000518835 (ODF1-003) 102560462-102561017 protein_coding
ENSG00000253633 (KB-1980E6.3)
 ENST00000519630 (KB-1980E6.3-002) 102528740-102538668 lincRNA
ENST00000523572 (KB-1980E6.3-001) 102528755-102529801 lincRNA
ENSG00000253923 (KB-1980E6.2)
 ENST00000517692 (KB-1980E6.2-001) 102417979-102418953 processed_pseudogene
ENSG00000274329 (AP002852.1)
 ENST00000610512 (AP002852.1-201) 102521867-102521977 miRNA
CIL_00000U_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037487-ENSMUSG00000061923 CGP 10090 15:37967328-38226735
GeneTranscriptPositionBiotype
ENSMUSG00000037487 (Ubr5)
ubiquitin protein ligase E3 component n-recognin 5 		ENSMUST00000110336 (Ubr5-201) 37967328-38078853 protein_coding
ENSMUSG00000061923 (Odf1)
outer dense fiber of sperm tails 1 		ENSMUST00000081966 (Odf1-001) 38219203-38226735 protein_coding
ENSMUSG00000065852 (Gm22353)
predicted gene, 22353 		ENSMUST00000083918 (Gm22353-201) 38058285-38058420 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00000U_0001ENSG00000104517ENST00000220959ENST00000517465ENST00000518145ENST00000518205ENST00000519365ENST00000519528ENST00000520539ENST00000520898ENST00000521312ENST00000521566ENST00000521767ENST00000521922ENST00000522327ENSG00000155087ENST00000285402ENST00000518835ENSG00000253633ENST00000519630ENST00000523572ENSG00000253923ENST00000517692ENSG00000274329ENST00000610512CIL_00000U_0002ENSMUSG00000037487ENSMUST00000110336ENSMUSG00000061923ENSMUST00000081966ENSMUSG00000065852ENSMUST00000083918
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00000U_0001ENSG00000104517ENST00000220959ENST00000518205ENST00000520539ENST00000521922ENSG00000155087ENST00000285402ENST00000518835ENSG00000253633ENST00000519630ENST00000523572ENSG00000253923ENST00000517692ENSG00000274329ENST00000610512CIL_00000U_0002ENSMUSG00000037487ENSMUST00000110336ENSMUSG00000061923ENSMUST00000081966ENSMUSG00000065852ENSMUST00000083918
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104517 ENST00000220959 4.222±0.00 4.207±0.00 1.328±0.00 1.915±0.09 4.003±0.61 2.757±0.45 3.164±0.00 1.564±0.00 1.402±0.00 5.902±0.00 5.620±0.00 3.662±1.06 1.336±0.00 11.090±0.00
ENST00000517465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.751±0.00 5.235±0.00 24.017±7.43
ENST00000519365 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520539 1.824±0.00 N/A 1.256±0.00 2.567±0.00 4.421±0.00 1.599±0.00 1.380±0.40 N/A 5.282±0.00 N/A N/A 4.281±1.37 N/A 6.129±0.00
ENST00000520898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521312 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521922 1.892±0.00 N/A N/A 2.008±0.27 4.452±0.00 4.452±0.00 1.952±0.28 1.813±0.61 6.956±0.00 3.804±0.00 N/A 2.024±0.00 2.715±2.29 18.014±0.00
ENST00000522327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000155087 ENST00000285402 0.021±0.00 0.065±0.00 N/A 0.040±0.01 N/A N/A N/A 0.077±0.00 N/A N/A N/A N/A N/A 206.108±126.50
ENST00000518835 0.175±0.00 0.133±0.00 N/A 0.255±0.00 N/A N/A N/A N/A N/A 0.310±0.00 N/A N/A N/A N/A
ENSG00000253633 ENST00000519630 N/A N/A N/A N/A 0.027±0.00 0.073±0.00 N/A N/A N/A 0.125±0.00 N/A 0.029±0.00 N/A N/A
ENST00000523572 N/A 0.071±0.00 N/A 0.458±0.00 0.463±0.00 0.295±0.00 N/A N/A N/A 0.553±0.00 N/A 0.142±0.07 N/A 0.065±0.00
ENSG00000253923 ENST00000517692 0.166±0.00 0.168±0.00 N/A 0.151±0.00 0.140±0.00 0.113±0.09 0.278±0.00 0.197±0.00 0.072±0.00 0.266±0.01 N/A 0.071±0.00 0.035±0.00 0.127±0.09
ENSG00000274329 ENST00000610512 1.907±0.00 5.944±0.00 N/A 1.470±0.00 2.367±0.00 1.067±0.00 0.626±0.00 1.399±0.00 N/A 10.381±0.00 1.443±0.00 136.082±0.00 N/A 0.827±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037487 ENSMUST00000110336 9.038±1.82 3.359±1.82 7.801±0.53 15.472±6.01 4.978±2.37 6.129±2.34 4.353±2.69 7.227±0.96 4.196±2.08 5.029±2.53 2.899±1.65 11.412±10.92 18.127±11.44 36.114±17.68
ENSMUSG00000061923 ENSMUST00000081966 0.058±0.03 N/A N/A N/A 0.057±0.01 0.076±0.02 0.419±0.07 0.285±0.07 0.008±0.00 0.183±0.05 0.028±0.00 0.139±0.07 0.062±0.00 1758.060±306.00
ENSMUSG00000065852 ENSMUST00000083918 N/A N/A N/A 6.966±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.940±0.00 N/A

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