C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin protein ligase E3 component n-recognin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110336 Ubr5-201 ENSMUSG00000037487 10090 - 15:37967328-38078853 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110336
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110336 9.038±1.82 3.359±1.82 7.801±0.53 15.472±6.01 4.978±2.37 6.129±2.34 4.353±2.69 7.227±0.96 4.196±2.08 5.029±2.53 2.899±1.65 11.412±10.92 18.127±11.44 36.114±17.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000S CIL_00000S_0002 CGP 15:37923952-38078853
CIL_00000U CIL_00000U_0002 CGP 15:37967328-38226735

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IEA protein polyubiquitination
GO:0003723 IEA RNA binding
GO:0004842 IBA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 IBA nucleus
GO:0005737 IBA cytoplasm
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane
GO:0016874 IEA ligase activity
GO:0033160 IEA positive regulation of protein import into nucleus, translocation
GO:0034450 IEA ubiquitin-ubiquitin ligase activity
GO:0035413 IEA positive regulation of catenin import into nucleus
GO:0042787 IBA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0043130 IEA ubiquitin binding
GO:0050847 IBA progesterone receptor signaling pathway
GO:0090263 IEA positive regulation of canonical Wnt signaling pathway
GO:1901315 IEA negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 IEA negative regulation of double-strand break repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000220959 UBR5-002 protein_coding Homo_sapiens 0 11890
ENST00000517465 UBR5-012 retained_intron Homo_sapiens 0 915
ENST00000518145 UBR5-007 retained_intron Homo_sapiens 0 351
ENST00000518205 UBR5-004 protein_coding Homo_sapiens 0 2420
ENST00000519365 UBR5-008 protein_coding Homo_sapiens 0 656
ENST00000519528 UBR5-014 processed_transcript Homo_sapiens 0 207
ENST00000520539 UBR5-001 protein_coding Homo_sapiens 0 12180
ENST00000520898 UBR5-009 protein_coding Homo_sapiens 0 843
ENST00000521566 UBR5-013 protein_coding Homo_sapiens 0 691
ENST00000521922 UBR5-003 protein_coding Homo_sapiens 0 11210
ENST00000522327 UBR5-006 retained_intron Homo_sapiens 0 366

Loading