C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_000077_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000087622-ENSDARG00000057731 CGP 7955 21:3237545-3272384
GeneTranscriptPositionBiotype
ENSDARG00000057731 (SHC3)
SHC (Src homology 2 domain containing) transforming protein 3
ENSDART00000080479 (SHC3-201) 3244915-3272384 protein_coding
ENSDARG00000087622 (FP085391.2)
Uncharacterized protein
ENSDART00000125118 (FP085391.2-201) 3237545-3238570 protein_coding
CIL_000077_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000213694-ENSG00000148082 CGP 9606 9:88991447-89178767
GeneTranscriptPositionBiotype
ENSG00000148082 (SHC3)
SHC (Src homology 2 domain containing) transforming protein 3
ENST00000375831 (SHC3-002) 89037366-89042137 protein_coding
ENST00000375835 (SHC3-001) 89013145-89178767 protein_coding
ENSG00000186354 (C9orf47)
chromosome 9 open reading frame 47
ENST00000334490 (C9orf47-003) 88990928-88996140 protein_coding
ENST00000375850 (C9orf47-002) 88990921-88992064 protein_coding
ENST00000375851 (C9orf47-001) 88990863-88996140 protein_coding
ENSG00000213694 (S1PR3)
sphingosine-1-phosphate receptor 3
ENST00000358157 (S1PR3-002) 88991447-89005010 protein_coding
ENST00000375846 (S1PR3-001) 88996506-89005010 protein_coding
ENSG00000224945 (RP11-82L18.2)
ENST00000429700 (RP11-82L18.2-001) 89088887-89109934 sense_intronic
ENST00000456944 (RP11-82L18.2-002) 89088604-89109298 sense_intronic
ENSG00000231632 (RP11-82L18.4)
ENST00000439796 (RP11-82L18.4-001) 89010034-89010478 lincRNA
CIL_000077_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000067586-ENSMUSG00000021448 CGP 10090 13:51408618-51567084
GeneTranscriptPositionBiotype
ENSMUSG00000021448 (Shc3)
src homology 2 domain-containing transforming protein C3
ENSMUST00000021898 (Shc3-201) 51431041-51567084 protein_coding
ENSMUSG00000067586 (S1pr3)
sphingosine-1-phosphate receptor 3
ENSMUST00000087978 (S1pr3-201) 51408618-51422797 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000077_0001ENSDARG00000057731ENSDART00000080479ENSDARG00000087622ENSDART00000125118CIL_000077_0002ENSG00000148082ENST00000375831ENST00000375835ENSG00000186354ENST00000334490ENST00000375850ENST00000375851ENSG00000213694ENST00000358157ENST00000375846ENSG00000224945ENST00000429700ENST00000456944ENSG00000231632ENST00000439796CIL_000077_0003ENSMUSG00000021448ENSMUST00000021898ENSMUSG00000067586ENSMUST00000087978
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000077_0001ENSDARG00000057731ENSDART00000080479ENSDARG00000087622ENSDART00000125118CIL_000077_0002ENSG00000148082ENST00000375831ENST00000375835ENSG00000186354ENST00000334490ENST00000375851ENSG00000213694ENST00000358157ENST00000375846ENSG00000224945ENST00000429700ENST00000456944ENSG00000231632ENST00000439796CIL_000077_0003ENSMUSG00000021448ENSMUST00000021898ENSMUSG00000067586ENSMUST00000087978
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000057731 ENSDART00000080479 N/A N/A N/A 15.638±14.24 N/A N/A 0.406±0.55 0.081±0.06 0.147±0.00 N/A 1.713±0.00 N/A N/A N/A
ENSDARG00000087622 ENSDART00000125118 N/A N/A N/A 1.390±0.09 N/A N/A 2.656±0.00 1.574±0.00 0.062±0.00 N/A 2.826±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000148082 ENST00000375831 N/A 0.223±0.00 N/A N/A N/A N/A N/A N/A 0.290±0.00 N/A N/A 0.140±0.00 0.070±0.02 N/A
ENST00000375835 0.227±0.00 N/A N/A N/A 0.138±0.04 0.266±0.17 0.056±0.01 0.044±0.00 0.203±0.19 0.367±0.07 0.027±0.00 0.189±0.07 0.081±0.02 0.179±0.02
ENSG00000186354 ENST00000334490 N/A N/A 0.347±0.00 0.095±0.00 N/A N/A N/A N/A N/A 0.082±0.00 0.114±0.00 N/A N/A N/A
ENST00000375850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000375851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00
ENSG00000213694 ENST00000358157 6.920±0.00 16.754±0.00 1.873±0.00 2.698±2.38 1.996±0.40 4.870±3.75 6.426±5.71 11.878±11.27 2.004±0.05 3.014±2.58 2.100±0.00 3.085±1.71 8.637±1.34 3.583±3.09
ENST00000375846 N/A N/A N/A 0.048±0.00 0.114±0.00 N/A N/A 0.074±0.00 0.190±0.00 N/A 0.109±0.00 N/A N/A 0.073±0.00
ENSG00000224945 ENST00000429700 0.259±0.00 0.299±0.00 0.978±0.00 0.850±0.00 0.132±0.00 0.346±0.05 N/A N/A 0.514±0.45 1.937±0.00 0.128±0.00 0.723±0.54 0.280±0.09 0.252±0.11
ENST00000456944 0.057±0.00 0.087±0.00 N/A 0.484±0.00 0.375±0.00 0.272±0.00 0.079±0.00 1.161±0.00 0.075±0.00 0.648±0.12 N/A 1.097±0.50 0.323±0.11 0.602±0.26
ENSG00000231632 ENST00000439796 0.082±0.00 0.327±0.00 1.861±0.00 N/A 0.254±0.00 1.380±0.00 0.197±0.00 0.126±0.00 N/A 0.600±0.00 N/A 0.842±0.00 0.263±0.00 0.143±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021448 ENSMUST00000021898 0.889±0.72 0.538±0.13 0.075±0.00 N/A 0.073±0.04 0.899±0.17 0.268±0.05 0.372±0.07 0.050±0.03 0.108±0.03 0.115±0.04 0.599±0.22 0.122±0.06 0.109±0.00
ENSMUSG00000067586 ENSMUST00000087978 5.923±1.93 4.644±0.48 1.862±0.26 2.587±1.75 6.857±0.92 3.163±0.30 7.257±0.19 6.453±1.79 0.755±0.24 21.592±6.49 1.481±0.35 4.585±1.50 1.481±0.72 1.180±0.38

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