C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000G3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000016496-ENSDARG00000062948 CGP 7955 24:22122231-22186213
GeneTranscriptPositionBiotype
ENSDARG00000016496 (cdk8)
cyclin-dependent kinase 8 		ENSDART00000007066 (cdk8-001) 22122231-22147292 protein_coding
ENSDART00000139740 (cdk8-002) 22137952-22142380 processed_transcript
ENSDARG00000062948 (wasf3)
WAS protein family, member 3 		ENSDART00000091529 (wasf3-001) 22148790-22186213 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000G3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132964-ENSG00000132970 CGP 9606 13:26254139-26688948
GeneTranscriptPositionBiotype
ENSG00000132964 (CDK8)
cyclin-dependent kinase 8 		ENST00000381527 (CDK8-001) 26254139-26405238 protein_coding
ENST00000465820 (CDK8-005) 26385211-26401599 processed_transcript
ENST00000477277 (CDK8-002) 26396217-26405178 processed_transcript
ENST00000477290 (CDK8-004) 26337567-26400515 processed_transcript
ENST00000480323 (CDK8-003) 26400073-26405238 processed_transcript
ENST00000536792 (CDK8-201) 26254642-26404081 protein_coding
ENSG00000132970 (WASF3)
WAS protein family, member 3 		ENST00000335327 (WASF3-001) 26557750-26688948 protein_coding
ENST00000361042 (WASF3-201) 26557703-26688943 protein_coding
ENST00000496788 (WASF3-002) 26641946-26676624 processed_transcript
ENSG00000234031 (RPS3AP44)
ribosomal protein S3a pseudogene 44 		ENST00000425466 (RPS3AP44-001) 26576886-26577675 processed_pseudogene
ENSG00000278413 (uc_338)
TUC338 		ENST00000617467 (uc_338.1-233) 26359529-26359702 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0000G3_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029635-ENSMUSG00000029636 CGP 10090 5:146231230-146472411
GeneTranscriptPositionBiotype
ENSMUSG00000029635 (Cdk8)
cyclin-dependent kinase 8 		ENSMUST00000031640 (Cdk8-001) 146231288-146302874 protein_coding
ENSMUST00000159467 (Cdk8-005) 146231385-146271664 protein_coding
ENSMUST00000159615 (Cdk8-004) 146294910-146302819 retained_intron
ENSMUST00000160924 (Cdk8-007) 146296365-146299512 retained_intron
ENSMUST00000161181 (Cdk8-002) 146231250-146302831 protein_coding
ENSMUST00000161652 (Cdk8-006) 146231288-146292744 protein_coding
ENSMUST00000162494 (Cdk8-003) 146231230-146302874 nonsense_mediated_decay
ENSMUSG00000029636 (Wasf3)
WAS protein family, member 3 		ENSMUST00000016143 (Wasf3-201) 146384985-146472411 protein_coding
ENSMUST00000110600 (Wasf3-001) 146384985-146435471 protein_coding
ENSMUSG00000080957 (Gm15739)
predicted gene 15739 		ENSMUST00000118049 (Gm15739-001) 146248551-146249422 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000G3_0001ENSDARG00000016496ENSDART00000007066ENSDART00000139740ENSDARG00000062948ENSDART00000091529CIL_0000G3_0002ENSG00000132964ENST00000381527ENST00000465820ENST00000477277ENST00000477290ENST00000480323ENST00000536792ENSG00000132970ENST00000335327ENST00000361042ENST00000496788ENSG00000234031ENST00000425466ENSG00000278413ENST00000617467CIL_0000G3_0003ENSMUSG00000029635ENSMUST00000031640ENSMUST00000159467ENSMUST00000159615ENSMUST00000160924ENSMUST00000161181ENSMUST00000161652ENSMUST00000162494ENSMUSG00000029636ENSMUST00000016143ENSMUST00000110600ENSMUSG00000080957ENSMUST00000118049
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000G3_0001ENSDARG00000016496ENSDART00000007066ENSDARG00000062948ENSDART00000091529CIL_0000G3_0002ENSG00000132964ENST00000381527ENST00000465820ENST00000477277ENST00000480323ENST00000536792ENSG00000132970ENST00000335327ENST00000361042ENST00000496788ENSG00000234031ENST00000425466ENSG00000278413ENST00000617467CIL_0000G3_0003ENSMUSG00000029635ENSMUST00000031640ENSMUST00000159467ENSMUST00000159615ENSMUST00000161181ENSMUST00000162494ENSMUSG00000029636ENSMUST00000016143ENSMUST00000110600ENSMUSG00000080957ENSMUST00000118049
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000016496 ENSDART00000007066 N/A N/A N/A 5.381±3.00 N/A N/A 2.570±0.87 8.733±0.55 1.829±0.00 N/A 1.965±0.00 N/A N/A N/A
ENSDART00000139740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000062948 ENSDART00000091529 N/A N/A N/A N/A N/A N/A 8.092±1.93 6.551±2.51 0.584±0.00 N/A 7.262±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132964 ENST00000381527 2.049±0.00 1.534±0.00 N/A 1.678±0.53 2.556±1.25 6.531±4.16 2.456±0.00 1.868±1.58 1.744±0.60 1.748±0.00 1.722±0.00 2.826±0.78 2.135±0.28 6.198±0.00
ENST00000465820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.801±0.00 6.280±0.00 10.547±0.00
ENST00000477277 N/A 0.830±0.00 0.542±0.00 N/A N/A N/A N/A N/A 0.511±0.00 1.225±0.00 N/A 1.393±0.00 0.803±0.23 N/A
ENST00000477290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480323 N/A 0.626±0.00 N/A N/A N/A 0.607±0.00 N/A N/A N/A N/A 0.515±0.00 0.674±0.00 N/A N/A
ENST00000536792 N/A N/A 0.699±0.00 N/A 3.005±0.00 1.248±0.00 1.373±0.00 1.387±0.00 2.496±0.00 2.963±0.00 N/A 5.555±5.21 6.831±0.00 14.237±0.00
ENSG00000132970 ENST00000335327 1.073±0.00 0.585±0.00 0.302±0.00 11.484±3.68 4.195±0.00 0.419±0.01 0.091±0.00 0.812±0.00 0.912±0.00 N/A 0.955±0.00 1.482±0.75 N/A 9.196±2.67
ENST00000361042 5.970±0.00 2.381±0.00 0.147±0.00 10.319±4.59 4.508±3.03 1.691±1.63 1.782±1.57 2.604±0.00 1.640±0.32 1.922±0.87 0.944±0.00 3.404±2.00 0.387±0.14 2.214±0.34
ENST00000496788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.795±0.00 N/A N/A N/A
ENSG00000234031 ENST00000425466 0.130±0.00 0.195±0.00 0.065±0.00 0.097±0.05 0.145±0.00 0.215±0.00 0.026±0.00 0.058±0.00 0.026±0.00 0.208±0.15 0.026±0.00 0.160±0.21 0.071±0.00 0.126±0.03
ENSG00000278413 ENST00000617467 N/A 0.197±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.397±0.00 N/A 0.397±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029635 ENSMUST00000031640 1.559±0.00 N/A 10.931±0.00 5.011±1.79 2.568±0.00 N/A 1.457±0.17 N/A 9.065±2.73 N/A 1.413±0.80 4.670±0.45 3.719±0.81 2.115±1.31
ENSMUST00000159467 N/A N/A N/A 31.649±0.00 N/A N/A N/A N/A N/A N/A N/A 71.997±0.00 50.837±16.78 19.586±0.00
ENSMUST00000159615 8.961±5.08 46.831±20.71 12.513±0.00 11.792±3.01 12.094±4.97 19.748±6.80 2.676±0.94 11.514±3.19 12.657±4.40 11.410±4.41 0.744±0.02 17.919±7.73 3.652±0.37 5.340±2.73
ENSMUST00000160924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161181 N/A N/A N/A N/A N/A 9.287±0.17 0.569±0.00 2.980±0.00 4.153±1.32 2.922±0.00 1.562±0.00 9.701±7.95 2.399±0.28 1.291±0.57
ENSMUST00000161652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162494 3.244±1.63 15.319±5.61 5.413±0.00 4.545±2.40 3.944±0.64 16.120±2.53 0.561±0.00 4.156±0.74 5.827±3.02 3.161±0.39 0.881±0.44 11.287±4.32 4.481±1.85 2.107±0.07
ENSMUSG00000029636 ENSMUST00000016143 1.782±0.99 10.311±3.95 N/A 3.155±0.00 0.285±0.18 0.925±0.54 0.110±0.00 0.885±0.21 0.026±0.02 2.292±1.52 0.134±0.05 1.776±1.20 0.428±0.30 1.782±0.88
ENSMUST00000110600 N/A N/A N/A N/A 1.072±0.19 N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000080957 ENSMUST00000118049 0.155±0.04 0.333±0.18 0.240±0.09 0.378±0.33 0.261±0.17 0.407±0.19 0.101±0.04 0.306±0.11 0.196±0.11 0.350±0.15 0.032±0.00 0.294±0.20 0.215±0.12 0.118±0.04

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