C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin-dependent kinase 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031640 Cdk8-001 ENSMUSG00000029635 10090 + 5:146231288-146302874 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000031640
Transcript ID Adipose Bladder Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000031640 1.559±0.00 10.931±0.00 5.011±1.79 2.568±0.00 1.457±0.17 9.065±2.73 1.413±0.80 4.670±0.45 3.719±0.81 2.115±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MF CIL_0004MF_0002 CGP 5:146209192-146302874
CIL_0000G3 CIL_0000G3_0003 CGP 5:146231230-146472411

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004693 IEA cyclin-dependent protein serine/threonine kinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISO nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006468 IEA protein phosphorylation
GO:0008353 IEA RNA polymerase II carboxy-terminal domain kinase activity
GO:0016592 ISO mediator complex
GO:0051726 IEA regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000007066 cdk8-001 protein_coding Danio_rerio 0 1037
ENST00000381527 CDK8-001 protein_coding Homo_sapiens 0 3151
ENST00000415020 AC079753.5-001 processed_pseudogene Homo_sapiens 0 641
ENST00000465820 CDK8-005 processed_transcript Homo_sapiens 0 641
ENST00000477277 CDK8-002 processed_transcript Homo_sapiens 0 1840
ENST00000477290 CDK8-004 processed_transcript Homo_sapiens 0 785
ENST00000480323 CDK8-003 processed_transcript Homo_sapiens 0 1581
ENST00000536792 CDK8-201 protein_coding Homo_sapiens 0 1351

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