C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000S2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000126785-ENSG00000179600 CGP 9606 14:63204114-63318879
GeneTranscriptPositionBiotype
ENSG00000126785 (RHOJ)
ras homolog family member J 		ENST00000316754 (RHOJ-001) 63204408-63293219 protein_coding
ENST00000555125 (RHOJ-005) 63204859-63283255 protein_coding
ENST00000557133 (RHOJ-004) 63204685-63269326 processed_transcript
ENST00000557447 (RHOJ-003) 63204114-63293219 nonsense_mediated_decay
ENSG00000179600 (GPHB5)
glycoprotein hormone beta 5 		ENST00000314140 (GPHB5-201) 63312928-63317849 protein_coding
ENST00000621500 (GPHB5-001) 63312835-63318879 protein_coding
ENSG00000258943 (RP11-696D21.2)
 ENST00000557475 (RP11-696D21.2-001) 63298126-63299547 lincRNA
ENSG00000265711 (AL049871.1)
 ENST00000578959 (AL049871.1-201) 63232715-63232812 miRNA
CIL_0000S2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000046768-ENSMUSG00000048982 CGP 10090 12:75308322-75416781
GeneTranscriptPositionBiotype
ENSMUSG00000046768 (Rhoj)
ras homolog gene family, member J 		ENSMUST00000055390 (Rhoj-001) 75308322-75401456 protein_coding
ENSMUST00000118602 (Rhoj-003) 75308322-75395817 protein_coding
ENSMUST00000118966 (Rhoj-002) 75308322-75397956 protein_coding
ENSMUST00000146096 (Rhoj-004) 75308673-75375648 retained_intron
ENSMUST00000172981 (Rhoj-005) 75308881-75400212 nonsense_mediated_decay
ENSMUSG00000048982 (Gphb5)
glycoprotein hormone beta 5 		ENSMUST00000051079 (Gphb5-201) 75411720-75416781 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000S2_0001ENSG00000126785ENST00000316754ENST00000555125ENST00000557133ENST00000557447ENSG00000179600ENST00000314140ENST00000621500ENSG00000258943ENST00000557475ENSG00000265711ENST00000578959CIL_0000S2_0002ENSMUSG00000046768ENSMUST00000055390ENSMUST00000118602ENSMUST00000118966ENSMUST00000146096ENSMUST00000172981ENSMUSG00000048982ENSMUST00000051079
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000S2_0001ENSG00000126785ENST00000316754ENST00000555125ENST00000557133ENST00000557447ENSG00000179600ENST00000314140ENSG00000258943ENST00000557475ENSG00000265711ENST00000578959CIL_0000S2_0002ENSMUSG00000046768ENSMUST00000055390ENSMUST00000118602ENSMUST00000118966ENSMUST00000146096ENSMUST00000172981ENSMUSG00000048982ENSMUST00000051079
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000126785 ENST00000316754 5.017±0.00 9.366±0.00 0.185±0.00 1.794±0.00 4.468±0.00 4.418±4.06 1.971±1.39 1.354±0.83 0.930±0.38 5.433±4.65 1.540±0.00 2.974±2.49 3.361±1.47 3.349±2.53
ENST00000555125 N/A N/A N/A N/A N/A N/A 0.606±0.00 N/A N/A 23.962±0.00 0.132±0.00 1.469±0.00 2.393±0.00 0.898±0.00
ENST00000557133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.964±0.00 N/A N/A N/A
ENST00000557447 N/A N/A N/A N/A 0.441±0.00 N/A N/A N/A N/A N/A 0.166±0.00 N/A N/A N/A
ENSG00000179600 ENST00000314140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A N/A
ENST00000621500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258943 ENST00000557475 0.058±0.00 0.146±0.00 N/A 0.031±0.00 0.174±0.00 N/A 0.083±0.00 0.219±0.00 0.026±0.00 0.194±0.15 N/A 0.112±0.07 N/A 0.189±0.00
ENSG00000265711 ENST00000578959 N/A N/A N/A 1.659±0.00 N/A N/A 0.304±0.00 N/A 1.245±0.00 0.346±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000046768 ENSMUST00000055390 34.649±9.02 11.783±2.30 54.971±0.34 3.330±2.47 30.230±3.64 20.740±1.91 15.606±1.39 8.433±0.59 2.518±0.92 49.970±4.26 3.974±0.63 38.177±15.61 4.025±2.56 1.018±0.55
ENSMUST00000118602 N/A N/A N/A 0.060±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000118966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.291±0.02 1.023±0.12 N/A N/A
ENSMUST00000146096 N/A 12.163±3.48 N/A N/A N/A 15.478±0.00 N/A N/A N/A N/A N/A 36.917±6.24 3.274±0.00 N/A
ENSMUST00000172981 58.340±15.37 12.315±0.42 N/A 1.215±0.00 43.577±7.18 27.162±1.88 25.788±0.53 12.276±0.82 2.087±0.23 70.526±7.42 N/A 56.581±7.63 4.205±0.00 1.392±0.63
ENSMUSG00000048982 ENSMUST00000051079 0.022±0.00 N/A 0.024±0.00 0.020±0.00 0.071±0.02 0.088±0.01 0.030±0.02 N/A 0.004±0.00 N/A N/A 0.057±0.04 0.003±0.00 0.061±0.00

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