C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog gene family, member J
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055390 Rhoj-001 ENSMUSG00000046768 10090 + 12:75308322-75401456 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055390
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055390 34.649±9.02 11.783±2.30 54.971±0.34 3.330±2.47 30.230±3.64 20.740±1.91 15.606±1.39 8.433±0.59 2.518±0.92 49.970±4.26 3.974±0.63 38.177±15.61 4.025±2.56 1.018±0.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SH CIL_0006SH_0003 CGP 12:74897217-75401456
CIL_0000S2 CIL_0000S2_0002 CGP 12:75308322-75416781

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 ISS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0005886 IEA plasma membrane
GO:0006184 ISS GTP catabolic process
GO:0007266 IDA Rho protein signal transduction
GO:0008360 IDA regulation of cell shape
GO:0030036 IDA actin cytoskeleton organization
GO:0061299 IMP retina vasculature morphogenesis in camera-type eye
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000238738 RHOQ-001 protein_coding Homo_sapiens 0 279
ENST00000316754 RHOJ-001 protein_coding Homo_sapiens 0 830
ENST00000432183 RHOQ-003 nonsense_mediated_decay Homo_sapiens 6e-19 99
ENST00000437982 RHOQP3-001 processed_pseudogene Homo_sapiens 0 235
ENST00000449922 RHOQP2-001 processed_pseudogene Homo_sapiens 0 241
ENST00000473428 RHOQ-007 nonsense_mediated_decay Homo_sapiens 8e-23 111
ENST00000482449 RHOQ-002 protein_coding Homo_sapiens 1e-30 137
ENST00000489471 RHOQ-006 nonsense_mediated_decay Homo_sapiens 9e-23 111
ENST00000494370 RHOQ-005 retained_intron Homo_sapiens 3e-17 94
ENST00000555125 RHOJ-005 protein_coding Homo_sapiens 0 586
ENST00000555758 RHOQP1-001 processed_pseudogene Homo_sapiens 0 257
ENST00000557133 RHOJ-004 processed_transcript Homo_sapiens 0 279
ENST00000557447 RHOJ-003 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000616091 RHOQ-201 protein_coding Homo_sapiens 0 279

Loading