C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog family member J
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000316754 RHOJ-001 ENSG00000126785 9606 + 14:63204408-63293219 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316754
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316754 5.017±0.00 9.366±0.00 0.185±0.00 1.794±0.00 4.468±0.00 4.418±4.06 1.971±1.39 1.354±0.83 0.930±0.38 5.433±4.65 1.540±0.00 2.974±2.49 3.361±1.47 3.349±2.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SH CIL_0006SH_0002 CGP 14:62699454-63293219
CIL_0000S2 CIL_0000S2_0001 CGP 14:63204114-63318879

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 NAS GTPase activity
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005886 TAS plasma membrane
GO:0006184 NAS:IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 TAS:IEA small GTPase mediated signal transduction
GO:0007266 IEA Rho protein signal transduction
GO:0008360 IEA regulation of cell shape
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0030036 IMP actin cytoskeleton organization
GO:0051056 TAS regulation of small GTPase mediated signal transduction
GO:0061299 IEA retina vasculature morphogenesis in camera-type eye
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055390 Rhoj-001 protein_coding Mus_musculus 0 830
ENSMUST00000118966 Rhoj-002 protein_coding Mus_musculus 0 588
ENSMUST00000118602 Rhoj-003 protein_coding Mus_musculus 0 588
ENSMUST00000172981 Rhoj-005 nonsense_mediated_decay Mus_musculus 0 462
ENSMUST00000146096 Rhoj-004 retained_intron Mus_musculus 0 279

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